Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12 116 3e-21 seq17 105 6e-18 seq13 104 2e-17 seq21 100 3e-16 seq2 96.9 3e-15 seq1 84.2 2e-11 >seq12 Length=134183262 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 4096325 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 4096266 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| |||||||| || ||||| ||||||||||| ||||| ||| Sbjct 4096265 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTG 4096206 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || || || ||| ||||| ||||| || Sbjct 4096205 CCTGTTTCCGTCTGAGACTCAATGATGGC 4096177 >seq17 Length=90481686 Score = 105 bits (116), Expect = 6e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| |||||||| Sbjct 60460178 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 60460119 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 60460118 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 60460059 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || || || |||||||| ||| ||||||| | | | ||| || || || Sbjct 60460058 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGTACTTTGTCTGACTA 60460000 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 60459999 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 60459958 >seq13 Length=135337776 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || |||||| | || || || || Sbjct 126789529 ATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 126789470 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | |||||| || ||| | |||||||||||| | || || ||||| Sbjct 126789469 GACACCATCGAGAACGTCAAAGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 126789411 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || ||||| |||||| ||||||| | | | || || || || | Sbjct 126789410 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 126789352 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || ||||| || ||||| || |||| || | ||||||| ||| Sbjct 126789351 ACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 126789302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| || || || |||||| |||| ||||| || Sbjct 126789757 ATGCAGATCTTTGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGT 126789698 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || || || ||||||||| | || || ||||| Sbjct 126789697 GACACCATCGAGAATGTCAAGGCAAAG-ATCCAAGATAAGGAAGGCATCCCTCCTGACCA 126789639 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || || || |||||| ||||||| | || || || || || Sbjct 126789638 GCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 126789579 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || | || ||||| || Sbjct 126789578 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCT 126789546 >seq21 Length=62195757 Score = 100 bits (110), Expect = 3e-16 Identities = 156/220 (71%), Gaps = 15/220 (7%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || ||||| | ||| |||||| || | |||||||| ||| Sbjct 34489552 ATGCAGATTTTCGTGAAAACCCTTACAGGGAGAACCATCACCCTCAAGGTTGAACCCTCC 34489611 Query 31253 GACAGTGTC--GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | || | |||| | | || ||| | ||| |||||||| | || || || | Sbjct 34489612 GATA-TGACAGGAAATGTAAAGACCAAGA-TCCAGGATAAGGAAGGAATTCCTCCTGATC 34489669 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||| | |||||||| |||||||| || ||||||| || || || || | Sbjct 34489670 GGCAAAGACTAATATTTGCTGGCAAGCAACTGGAAGA-----TGTCT------GACTACA 34489718 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||| || || ||||||||||| || | ||||| Sbjct 34489719 ACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 34489758 >seq2 Length=114371477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| || || || || ||||| || |||||| | || || || Sbjct 110579831 TCAAA-ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAG 110579889 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | || ||| ||||||||| | || ||| Sbjct 110579890 CCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCC 110579949 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 110579950 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 110580009 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || ||||| ||||| || || ||||| || | |||||||| || Sbjct 110580010 TACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGG 110580062 >seq1 Length=229774977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/218 (70%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 198269403 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAG 198269345 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGC 31304 || |||| |||||| || || | |||| | ||| ||||||||| | | | Sbjct 198269344 CCCAGTGACACCATCGAAAATGTGAAG--GCCAATATCCAGGATAAGGAAGGCATCCTCC 198269287 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA-CTCTATGACTATGAGC 31363 ||||||||||| | || || || || |||| ||| | ||||| || | ||| | Sbjct 198269286 CCGACCAGCAGAGGCTCATCTTTGCAGGCATGCAGCTAGAAGATGGCTGT-ACTCTTTCT 198269228 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||| || ||||| ||||| || | ||||| Sbjct 198269227 GACTACAACATCCAGAAAGAGTCGACCCTGTACCTGGT 198269190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445709152450080