Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq12 116 3e-21
seq17 105 6e-18
seq13 104 2e-17
seq21 100 3e-16
seq2 96.9 3e-15
seq1 84.2 2e-11
>seq12
Length=134183262
Score = 116 bits (128), Expect = 3e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| |||||||| || ||||| || || || ||||| || || || ||
Sbjct 4096325 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 4096266
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| |||||||| || ||||| ||||||||||| ||||| |||
Sbjct 4096265 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTG 4096206
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| || || ||| ||||| ||||| ||
Sbjct 4096205 CCTGTTTCCGTCTGAGACTCAATGATGGC 4096177
>seq17
Length=90481686
Score = 105 bits (116), Expect = 6e-18
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| || || || || || || || |||||| |||| ||||||||
Sbjct 60460178 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 60460119
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || ||
Sbjct 60460118 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 60460059
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|||||| | || || || |||||||| ||| ||||||| | | | ||| || || ||
Sbjct 60460058 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGTACTTTGTCTGACTA 60460000
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|| |||||||| || || ||||||||||| || | |||||
Sbjct 60459999 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 60459958
>seq13
Length=135337776
Score = 104 bits (114), Expect = 2e-17
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| || || ||||| || |||||| | || || || ||
Sbjct 126789529 ATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 126789470
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | |||||| || ||| | |||||||||||| | || || |||||
Sbjct 126789469 GACACCATCGAGAACGTCAAAGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 126789411
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|||| | | || || ||||| |||||| ||||||| | | | || || || || |
Sbjct 126789410 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 126789352
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|||| || ||||| || ||||| || |||| || | ||||||| |||
Sbjct 126789351 ACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 126789302
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||||||||| || || || |||||| |||| ||||| ||
Sbjct 126789757 ATGCAGATCTTTGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGT 126789698
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || || || || ||||||||| | || || |||||
Sbjct 126789697 GACACCATCGAGAATGTCAAGGCAAAG-ATCCAAGATAAGGAAGGCATCCCTCCTGACCA 126789639
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || || || || |||||| ||||||| | || || || || ||
Sbjct 126789638 GCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 126789579
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || ||||| || || | || ||||| ||
Sbjct 126789578 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCT 126789546
>seq21
Length=62195757
Score = 100 bits (110), Expect = 3e-16
Identities = 156/220 (71%), Gaps = 15/220 (7%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| || || || ||||| | ||| |||||| || | |||||||| |||
Sbjct 34489552 ATGCAGATTTTCGTGAAAACCCTTACAGGGAGAACCATCACCCTCAAGGTTGAACCCTCC 34489611
Query 31253 GACAGTGTC--GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
|| | || | |||| | | || ||| | ||| |||||||| | || || || |
Sbjct 34489612 GATA-TGACAGGAAATGTAAAGACCAAGA-TCCAGGATAAGGAAGGAATTCCTCCTGATC 34489669
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
||| | |||||||| |||||||| || ||||||| || || || || |
Sbjct 34489670 GGCAAAGACTAATATTTGCTGGCAAGCAACTGGAAGA-----TGTCT------GACTACA 34489718
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|||||||||| || || ||||||||||| || | |||||
Sbjct 34489719 ACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 34489758
>seq2
Length=114371477
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/233 (70%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || ||||| || || || || ||||| || |||||| | || || ||
Sbjct 110579831 TCAAA-ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAG 110579889
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| |||| |||||| || || | || ||| ||||||||| | || |||
Sbjct 110579890 CCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCC 110579949
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366
||||||||| | || || || || ||||| ||| ||||||| ||| | ||
Sbjct 110579950 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 110580009
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| ||||| || ||||| ||||| || || ||||| || | |||||||| ||
Sbjct 110580010 TACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGG 110580062
>seq1
Length=229774977
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/218 (70%), Gaps = 7/218 (3%)
Strand=Plus/Minus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || ||
Sbjct 198269403 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAG 198269345
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGC 31304
|| |||| |||||| || || | |||| | ||| ||||||||| | | |
Sbjct 198269344 CCCAGTGACACCATCGAAAATGTGAAG--GCCAATATCCAGGATAAGGAAGGCATCCTCC 198269287
Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA-CTCTATGACTATGAGC 31363
||||||||||| | || || || || |||| ||| | ||||| || | ||| |
Sbjct 198269286 CCGACCAGCAGAGGCTCATCTTTGCAGGCATGCAGCTAGAAGATGGCTGT-ACTCTTTCT 198269228
Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|| || ||||| || ||||| ||||| || | |||||
Sbjct 198269227 GACTACAACATCCAGAAAGAGTCGACCCTGTACCTGGT 198269190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445709152450080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |