Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq24 269 2e-67 seq2 116 3e-21 seq9 105 6e-18 seq1 96.9 3e-15 seq12 93.3 4e-14 >seq24 Length=155392059 Score = 269 bits (298), Expect = 2e-67 Identities = 537/786 (68%), Gaps = 21/786 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 |||||||| | | ||| | ||| |||||| | ||||| || | |||| | || || Sbjct 44583459 ATTCTCTTTTGGACTTGACACCACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAA 44583518 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || |||||||| | ||||| |||| |||| ||||| ||| || | | ||| Sbjct 44583519 GAAGTTAGTCTTTC-----AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCC 44583573 Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487 ||| || || | |||| | || | | ||| ||||| || || || || || || Sbjct 44583574 GAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTG 44583633 Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547 ||||| | |||||||| || || || | ||| || | || | || | || || Sbjct 44583634 CTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTC 44583693 Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTT---CCTTAGATGGTGG 11604 | |||||| | ||| |||| || ||||| | | |||| ||| |||||| Sbjct 44583694 TTGTTCTATCTGAACAGCATTGATAATTATTTC---TCTCACTTTCTCCTCCGATGGTTT 44583750 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 44583751 GTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 44583810 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || |||||||| ||||| || | || ||||||| ||||||||| || | ||| ||||| Sbjct 44583811 AATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATAT 44583870 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| |||||||||||||| || || || || || || || ||||| || | ||| Sbjct 44583871 CGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTC 44583930 Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| ||||||||| || ||| || || Sbjct 44583931 ACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACAAGGCCCAATCTGCCGCCTTCTTGAC 44583990 Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| | ||| || || || | | |||| | |||||| | |||| | | Sbjct 44583991 ACAAGGCATCG-TTCAATGGCATTGAAGAGAAATTC--CTTTTCTTTGGGATCTTTGATG 44584047 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | | |||||||||||| ||||| || |||||||| || ||||| || Sbjct 44584048 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 44584107 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTAC-ATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| || || |||| | ||| || || | ||||| ||| | ||||| Sbjct 44584108 CCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCT-AAATCGCTCCACCAAATT 44584166 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||||| || |||||||| | |||||| || | || | ||| |||||| ||| | Sbjct 44584167 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCT 44584226 Query 12079 TTCGTC 12084 || || Sbjct 44584227 CTCCTC 44584232 Score = 150 bits (166), Expect = 2e-31 Identities = 316/463 (68%), Gaps = 20/463 (4%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903 Query 11750 ATTCCCTCCACAGCTGCAAATGC----TACTACTCTTTCTCCAT--ATA----CCTTGTT 11799 | | ||||| ||||| || | | || | |||||||| || | ||||| Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 143817843 Query 11800 GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859 | | ||||| | ||||| | || ||||| || || || ||| ||||| || Sbjct 143817842 CCCA---ATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 143817787 Query 11860 AGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || | | | |||| | ||||| | |||||| ||| |||||| || || | | | Sbjct 143817786 GGCACTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATATGTGTCAATAAGGAGA 143817731 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||| ||||| ||||| || ||||| ||||| ||||| || |||||||| || | Sbjct 143817730 TTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTT 143817671 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 |||| | | | || || | |||| |||| | || || |||| || || |||||| Sbjct 143817670 TCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCA 143817611 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTT 12080 | | |||||| || || || ||||| |||||| ||| ||| Sbjct 143817610 CATGCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTT 143817568 >seq2 Length=114371477 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||||||||| | || ||||||| ||||||||| || Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| ||||| |||||||| || || ||||| || ||||| ||| Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10280333 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 10280332 ACAACACGTTCACC 10280319 >seq9 Length=144709823 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || || ||||| ||||| || | ||| ||||| | |||| || | Sbjct 101030341 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 101030400 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| | Sbjct 101030401 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 101030460 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 101030461 CCACCACTCTTTCCCC 101030476 >seq1 Length=229774977 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| ||| || || || || | | |||||||||||| ||||| | |||||||| || Sbjct 140699697 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGC 140699756 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||| || |||||||||| || || |||| | ||| || || ||||| || Sbjct 140699757 AATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 140699816 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057 | | || || |||||||| || |||||||| | |||||| || || || Sbjct 140699817 CACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 140699864 >seq12 Length=134183262 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 4105340 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 4105281 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 4105280 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 4105221 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 4105220 CTGTTTCTTATACCAT 4105205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468464629702560