Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq24 361 7e-95
seq13 165 1e-35
seq1 152 7e-32
seq2 114 2e-20
seq12 111 2e-19
seq20 89.7 7e-13
>seq24
Length=155392059
Score = 361 bits (400), Expect = 7e-95
Identities = 646/938 (69%), Gaps = 20/938 (2%)
Strand=Plus/Plus
Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867
|||| || ||| ||| || | |||| ||| |||| | || |||| ||||||||
Sbjct 44583431 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44583490
Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927
| || || || || || | | || || || ||||| || | | ||| ||||| |
Sbjct 44583491 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44583545
Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987
|| | || || ||||| | || ||| || |||| |||| ||| || |
Sbjct 44583546 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44583605
Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047
||| ||||| ||||| || || ||| ||||| | |||||||| || || || |
Sbjct 44583606 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44583665
Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107
| || || | ||| | || || ||||||||||| || || || | | || ||
Sbjct 44583666 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44583725
Query 36108 ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 36167
| | ||| | || || ||| | | | ||||| |||||||| || || ||||
Sbjct 44583726 CTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44583785
Query 36168 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 36227
| ||||||| |||||| ||||| ||||| | ||| |||||||||||||| || ||||| |
Sbjct 44583786 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCA 44583845
Query 36228 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 36287
| || || || || ||||| ||||| || ||||| || ||||||||||| || |||||||
Sbjct 44583846 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44583905
Query 36288 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTT 36344
|||| || ||||| | || | || ||||| | | | |||| |||||
Sbjct 44583906 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACA 44583965
Query 36345 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 36404
|||||||| ||| ||| || ||||||||||| || || || ||||| |||||| | |
Sbjct 44583966 AGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATT 44584024
Query 36405 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 36464
||||| || |||||| | || || ||||| | |||||||||||||| ||||| |
Sbjct 44584025 CCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44584084
Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524
||||||| ||||| ||||| || || |||||||| | || || |||||||| ||| |
Sbjct 44584085 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44584144
Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584
| |||||| || | ||||||||||| ||||| || ||||| |||||||| || |||
Sbjct 44584145 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44584204
Query 36585 ATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG----ATA 36640
||||| |||||||||| | || | || || | ||||| || || ||
Sbjct 44584205 GAACATGGGATATAAAATATCTCTC-CTCGGGCTTCGGGGATTCC---CAGTGCCGAATG 44584260
Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700
|| || || | ||||| || || ||||| || || ||||| ||||| ||||||||
Sbjct 44584261 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44584320
Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738
| |||||| ||||| || | | || || || |||||
Sbjct 44584321 TGCCAGATATCATGGTACTCGACGGGGAAGATGACAAA 44584358
Score = 199 bits (220), Expect = 5e-46
Identities = 381/554 (69%), Gaps = 12/554 (2%)
Strand=Plus/Minus
Query 36170 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 36229
||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| ||
Sbjct 143818010 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 143817951
Query 36230 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 36289
|| | || || ||||| ||||| | ||||| || ||||||||||| | | ||| ||
Sbjct 143817950 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACC 143817891
Query 36290 GCCGCAAAGGC--AAT--AAGTCTCTCTCCAT---AACCGGCACTGTCATGTATCC-ACT 36341
|||||||| || || | ||||||| | || | ||| |||| ||
Sbjct 143817890 AAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACA 143817831
Query 36342 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 36401
|| ||||| | |||||||| || |||| |||||| || || || ||| | ||||||
Sbjct 143817830 CAAGA-CCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGGCACTGAAGAGAA 143817773
Query 36402 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 36461
| | |||| || |||||||| |||||| ||||| | ||| ||| ||||| ||||
Sbjct 143817772 ATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAGAAT 143817715
Query 36462 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 36521
| |||||||| || || ||||| || || ||||| || | || |||||| | ||||
Sbjct 143817714 GTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCCGAACTT 143817655
Query 36522 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 36581
|| | |||| |||| | || ||||||| | ||| || |||| |||||||| || |
Sbjct 143817654 CTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCAAATAAAG 143817595
Query 36582 CCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATAT 36641
||| | ||| |||||||||| ||| | || | || | ||| | || |
Sbjct 143817594 CCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAGTGCCAAATGT 143817535
Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701
| || || | ||||| || | | |||| || || ||||| | || || ||||| |
Sbjct 143817534 CCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTTTACATTT 143817475
Query 36702 TCCAGATGTCATGA 36715
|||| || ||||||
Sbjct 143817474 TCCAAATATCATGA 143817461
>seq13
Length=135337776
Score = 165 bits (182), Expect = 1e-35
Identities = 166/215 (77%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 9218 TTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATT 9277
|||||| ||| || |||||| | |||||| || | ||||||| |||| ||| |||||
Sbjct 23278143 TTTTAA---TTACTTTTTATTAACTGCTTCCAGAAACCGTAACAGGTGCAGGAATAGATT 23278087
Query 9278 GATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATG 9337
||||||||||||||||| |||| | ||||| || || |||||||| || || |||||
Sbjct 23278086 GATGATATCCAAGTAGAGGCTGATGGCAGCTAATACGTACTCTTCAGGTGACAGTTTATG 23278027
Query 9338 TATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGA 9397
|| |||||||| ||||||||||| |||||||| ||||| | |||||| || ||| |
Sbjct 23278026 CATCAGTGAGTGTGTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTGCAGCGGC 23277967
Query 9398 CAGGACCAGCTCCACTGTTTCACTTTGCACAAATA 9432
| ||||| ||||| | | ||||| | | |||||
Sbjct 23277966 TAAGACCAACTCCATTATCTCACTATAAAAAAATA 23277932
Score = 129 bits (142), Expect = 8e-25
Identities = 100/119 (84%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| |||||||| |||| |||||||||||||| |||||| | ||| |
Sbjct 23270271 CCTGCTCCAAATTTGCTGAAATCCTTCTTAGATTGTAGAGTATACACAGTCAAACCAAAA 23270212
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| |||| ||||||||| ||||||||||||| || | || |||||||||||||||||
Sbjct 23270211 AATACTGTAGTAGTCAGTATGAAAGCTTGCAGAATAATATATACATCATAGAAAGTAAC 23270153
Score = 89.7 bits (98), Expect = 7e-13
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 23246541 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCTGCTGCCATAGTTGAAGTCGTCCTCGA 23246482
Query 9907 TGGAGGAGC 9915
| |||||||
Sbjct 23246481 TCGAGGAGC 23246473
>seq1
Length=229774977
Score = 152 bits (168), Expect = 7e-32
Identities = 188/256 (73%), Gaps = 6/256 (2%)
Strand=Plus/Plus
Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406
||||||| |||||||| |||||||| ||| || || | || |||||| | |
Sbjct 140699632 GCCCAATTTGCCTTCTTG---ACACAAGG---TGTTTCAATGGTGTTGAAGAGAAATTCC 140699685
Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466
|||| || |||||| | || || ||||| | |||||||||||||| ||||| ||
Sbjct 140699686 CTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTG 140699745
Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526
||||| ||||| ||||| || | |||||||| | || || |||||||| ||||||
Sbjct 140699746 TTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGG 140699805
Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586
| |||||| || | || |||||||| ||||| || ||||| |||||||| || ||||
Sbjct 140699806 CTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGA 140699865
Query 36587 ACATGTTTTATAAAAT 36602
||| | ||||||||
Sbjct 140699866 ACACGGGATATAAAAT 140699881
>seq2
Length=114371477
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || |
Sbjct 10280454 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10280395
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 10280394 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10280335
Query 36300 C 36300
|
Sbjct 10280334 C 10280334
Score = 104 bits (114), Expect = 3e-17
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||| | || || ||||| | ||||||||||||||| ||||| |||||||| |||||
Sbjct 10278080 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10278021
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
||||| || || |||||||| | || || |||||||| |||||| | |||||| ||
Sbjct 10278020 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10277961
>seq12
Length=134183262
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| ||||| || |||||||| || |||||| ||| | || || || || ||||| |
Sbjct 4108186 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 4108127
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
||| |||||| |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 4108126 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 4108067
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 4108066 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 4108016
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 4105340 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 4105281
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
||||||||||| |||| || |||||||| || || || ||||| || || | | ||||
Sbjct 4105280 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 4105221
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 4105220 CTGTTTCTTATACCATA 4105204
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| |||||||||||||| | || | |||||||| |
Sbjct 4094695 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 4094636
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|| || || |||||||| ||||| || | ||| ||||| | | || || |||||||
Sbjct 4094635 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 4094576
Query 66176 CGGTTCCAAGTATATGGC 66193
|| |||| ||| || ||
Sbjct 4094575 AGGCTCCAGGTAAATAGC 4094558
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| |||||||||||||| | || || || || || || || || | |
Sbjct 4079612 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 4079553
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| ||||| || || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 4079552 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 4079493
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | || | |||||||| || |||||
Sbjct 4079492 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 4079447
>seq20
Length=64411610
Score = 89.7 bits (98), Expect = 7e-13
Identities = 179/259 (69%), Gaps = 10/259 (4%)
Strand=Plus/Minus
Query 33900 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 33957
|||||| || ||||| ||| ||| | ||| | ||| ||| | || ||| ||||||
Sbjct 58281248 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 58281191
Query 33958 TTCAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATT 34016
| | |||||||||| | | | |||| | | || ||||| || |||| ||| || | ||
Sbjct 58281190 TCTATTTCTGGATAAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 58281131
Query 34017 T-ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAAT 34075
| || | || | ||| | | ||||| || | || || | |||||| |||||||
Sbjct 58281130 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 58281071
Query 34076 CTTCGTCTATTACACCGCCTCCTATATCAATA---CCTTTTAGGGACAGACCAGACCTAG 34132
|||| ||| | ||||| |||||| ||||| | |||| | || |||||||| |
Sbjct 58281070 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 58281011
Query 34133 GAGCTATTCTACCATAGCA 34151
|||||| ||| ||||| ||
Sbjct 58281010 GAGCTACTCT-CCATAACA 58280993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658088274158160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |