Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq24 122 6e-23 >seq24 Length=155392059 Score = 122 bits (134), Expect = 6e-23 Identities = 397/598 (66%), Gaps = 44/598 (7%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| |||||||| | || || || |||||| ||||||||||| || | || Sbjct 44584319 ATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGAC 44584260 Query 22405 GTACGCCATTGGACAGAAAAACTGA---CCGAGGCTGAGCGCAGGTTCATGTCTCACATA 22461 | || || ||| ||| | || |||||| || | || || || || | Sbjct 44584259 ATTCGGCACTGG---GAATCCCCGAAGCCCGAGG---AGAGATATTTTATATCCCATGTT 44584206 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 |||| ||||||||| ||| |||||||| ||| || || | ||| || |||| Sbjct 44584205 CTGGTTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTT 44584149 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || ||| | | | ||| |||||||| | ||||||||| || || | || || Sbjct 44584148 AGCCAAATAGTTC----AGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCAT 44584093 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635 |||||| |||||| |||||||||||| || || ||| ||| ||| | | ||||| Sbjct 44584092 GGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACAC-TTAC-ATC-AAAGATCC 44584036 Query 22636 -AATCAAGCCGCATTGTT-TTCA--GCAGCTGAAGATATGCCATGTGTTAA--AGCCAAG 22689 || || | ||| | |||| || |||| ||||| ||||| || || | | Sbjct 44584035 CAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAGAAGGC--G 44583979 Query 22690 GCACAGTGGGCTGCACAATGGCTGAAT--GCCACACATAAGT---CTATCGCAACACGTC 22744 ||| | ||||| | |||| || | ||| | | | |||| | | |||| Sbjct 44583978 GCAGATTGGGC----CTTGTGCTGGATTGGGGACAAAGAGGCTACCTATGGTGA-ACGTG 44583924 Query 22745 TCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCT 22804 | | ||||| || || || |||||| || | |||||||| || ||||| | ||||||| Sbjct 44583923 TTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 44583864 Query 22805 GGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTG 22864 |||| |||||||| || ||||| || | |||||||||| || | |||||| | | Sbjct 44583863 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAG 44583804 Query 22865 ACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | || ||| |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 44583803 ATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCAAACACCTGGTACACAAACC 44583746 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || ||| || | | |||||||| || ||||| ||||||||||| Sbjct 143817880 GCCTTTGCCTTGGTGGAAAGCACCTTCTTTTCTGGTTCTTTTGCATTGATATTCTGGCTC 143817939 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||||| || ||||| || | | |||||||| || | |||||| |||| || Sbjct 143817940 AAGAAACAAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGTGATGAG 143817999 Query 22870 GGTCTACACTGTGACTTTGCTTG 22892 ||| |||||||| |||||||||| Sbjct 143818000 GGTTTACACTGTTACTTTGCTTG 143818022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356188994432422