Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 2e-17
seq9876 82.4 8e-11
seq1 82.4 8e-11
>seq2
Length=114371477
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | || |||||||| || ||||| || || | ||||
Sbjct 110580050 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 110579991
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || || ||| |||| || | ||||| |||||||| |||||||| ||
Sbjct 110579990 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 110579931
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | ||| | ||||| ||||||||||||||| ||| |
Sbjct 110579930 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 110579871
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||||||||| | ||||| ||||| || |||||
Sbjct 110579870 GTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 110579836
>seq9876
Length=376000
Score = 82.4 bits (90), Expect = 8e-11
Identities = 113/157 (72%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCG-GGAGGTATGCCTTCTTT 139668
||||| | || || || ||| |||| || | ||||||||| || || ||||||||||
Sbjct 278336 TCTTCCAACTTCTTGCCTGCAAAGATGAGCCTCTGCTGATCGCGGGGGGATGCCTTCTTC 278277
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
|| ||| || ||| | | ||| | ||||| ||||||||||||| | ||| |
Sbjct 278276 ATCCTGGATCTTGGCTTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 278217
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| ||||||| || || ||||| || ||||||
Sbjct 278216 GGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATA 278180
>seq1
Length=229774977
Score = 82.4 bits (90), Expect = 8e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| | || ||| |||| || | ||||| ||||| | |||||||| ||
Sbjct 198269244 TCTTCTAGCTGCATGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTA 198269303
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | ||| | ||||| ||||||||||||||| ||| |
Sbjct 198269304 TCCTGGATATTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 198269363
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| |||| || || ||||| || |||||
Sbjct 198269364 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 198269398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496000292980800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |