Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq24 396 4e-105
seq1 159 5e-34
seq12 114 2e-20
seq2 100 4e-16
seq20 89.7 7e-13
>seq24
Length=155392059
Score = 396 bits (438), Expect = 4e-105
Identities = 657/941 (70%), Gaps = 26/941 (3%)
Strand=Plus/Plus
Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669
|||| |||||| ||| || | |||| ||| |||| | || |||| ||||||||
Sbjct 44583431 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44583490
Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729
| || || || || || | | || || || ||||| |||| | ||| ||||| |
Sbjct 44583491 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44583545
Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789
|| | || ||||| || | || ||| || |||| |||| ||| || |
Sbjct 44583546 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44583605
Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849
||| || || ||||| || || ||| ||||| | |||||||| || || || |
Sbjct 44583606 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44583665
Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909
| || || | ||| | || || ||||||||||| || || |||| | || ||
Sbjct 44583666 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44583725
Query 49910 ATCTAACGGTTTCTTCACTCGGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGA 49966
||| || ||||| | | || ||| | | | | ||||| |||||||| || || |
Sbjct 44583726 CTCTCAC--TTTCTCCTC-CGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAA 44583782
Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026
|||| ||||| | |||||| ||||| ||||| ||||| |||||||||||||| || ||||
Sbjct 44583783 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 44583842
Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086
| || || || || || ||||| ||||| || ||||| || |||||||||||||| ||||
Sbjct 44583843 TCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTT 44583902
Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACT 50143
||||||| || ||||| |||| | || ||||| | || |||| |||||
Sbjct 44583903 CTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGC 44583962
Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203
|||||||| ||| ||| || ||||||||||||||| | |||||||| ||||||
Sbjct 44583963 ACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAGAA 44584021
Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263
| | ||||| || |||||| | ||||| || || | |||||||||||||| ||||
Sbjct 44584022 ATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44584081
Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323
| |||||||| ||||| || || || || |||||||| | || || |||||||| |||
Sbjct 44584082 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44584141
Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383
| | |||||| || | ||||||||||| ||||| || ||||| |||||||| ||
Sbjct 44584142 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44584201
Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG---- 50439
||| ||||| |||||||| | | || | ||| || | ||||| || ||
Sbjct 44584202 CCAGAACATGGGATATAAAATATCTCTCCTCGGG-CTTCGGGGATTCC---CAGTGCCGA 44584257
Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499
|| || || || | || || || || ||||| || || ||||| ||||| ||||||
Sbjct 44584258 ATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATAC 44584317
Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540
|| | |||||| ||||| || | || ||||| || |||||
Sbjct 44584318 ATCTGCCAGATATCATGGTACTCGACGGGGAAGATGACAAA 44584358
Score = 201 bits (222), Expect = 2e-46
Identities = 319/451 (71%), Gaps = 20/451 (4%)
Strand=Plus/Minus
Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031
||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| ||
Sbjct 143818010 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 143817951
Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091
|| | || || ||||| ||||| | ||||| || |||||||||||| | | ||| ||
Sbjct 143817950 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACC 143817891
Query 50092 GCGGCAAAGGC-------AACAAGTCTCTCTCCAT----AACTGGCGCTGTCATGTATCC 50140
||||||||| |||| || ||||||| ||| | | ||| ||||
Sbjct 143817890 AAGGCAAAGGCTGCATGCAACACGT---TCTCCATGGGTAAC-GTCTTTGTTCCCAATCC 143817835
Query 50141 A-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199
| | || ||||| | |||||||| || ||||| ||||||||||| |||||| | |||
Sbjct 143817834 AACACAAGA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGCACTGAAG 143817777
Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259
||| | | |||| || |||||||| ||| || || || | ||| ||| |||||
Sbjct 143817776 AGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCA 143817719
Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319
||||| |||||||| || || || || || || ||||| || | || |||||| |
Sbjct 143817718 GAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCCGA 143817659
Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379
|||||| | |||| |||| | || ||||||| | ||| || |||| ||||||||
Sbjct 143817658 ACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCAAAT 143817599
Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTT 50410
|| |||| | ||| |||||||| | |||
Sbjct 143817598 AAAGCCAGAATATGGGATATAAAATATCTTT 143817568
>seq1
Length=229774977
Score = 159 bits (176), Expect = 5e-34
Identities = 238/336 (71%), Gaps = 9/336 (3%)
Strand=Plus/Plus
Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC--- 50128
|||| ||||| |||| ||||| |||||||| |||| | || ||||| | ||
Sbjct 140699552 AAAAAAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 140699611
Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188
|||| || || | ||||||| |||||||| |||||||| ||||| |
Sbjct 140699612 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAA 140699665
Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248
||| || |||||| | | |||| || |||||| | ||||| || || | ||||
Sbjct 140699666 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140699725
Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308
|||||||||| ||||| ||||||| ||||| || || || | |||||||| | || |
Sbjct 140699726 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140699785
Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368
| |||||||| |||||| | |||||| || | || |||||||| ||||| || ||||
Sbjct 140699786 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 140699845
Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 50404
| |||||||| || |||| ||| | ||||||||
Sbjct 140699846 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140699881
>seq12
Length=134183262
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| |||||||| |||||||| || |||||| ||| | || || || || ||||| |
Sbjct 4108186 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 4108127
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
||| |||||| |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 4108126 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 4108067
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 4108066 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 4108016
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| |||||||||||||| | || |||||||||| | |||
Sbjct 4094691 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 4094632
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| ||||| | | || || ||||||| ||
Sbjct 4094631 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 4094572
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 4094571 TCCAGGTAAATAGC 4094558
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 4105340 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 4105281
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||| |||| || |||||||| || || || ||||| || || | | ||||
Sbjct 4105280 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 4105221
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 4105220 CTGTTTCTTATACCATA 4105204
>seq2
Length=114371477
Score = 100 bits (110), Expect = 4e-16
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||| | ||||| || || | ||||||||||||||| ||||| |||||||| |||||
Sbjct 10278080 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10278021
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339
|| || || || |||||||| | || || |||||||| |||||| | |||||| ||
Sbjct 10278020 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10277961
>seq20
Length=64411610
Score = 89.7 bits (98), Expect = 7e-13
Identities = 179/259 (69%), Gaps = 10/259 (4%)
Strand=Plus/Minus
Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760
||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||
Sbjct 58281248 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 58281191
Query 47761 TCCAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATT 47819
|| | |||||||||| | | | |||| | | || ||||| || |||| ||| || | ||
Sbjct 58281190 TCTATTTCTGGATAAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 58281131
Query 47820 T-ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAAT 47878
| || | ||| | ||| | | ||||| || | || || | ||||| |||||||
Sbjct 58281130 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 58281071
Query 47879 CTTCGTCTATTACACCACCTCCTATAT---CAATGCCTTTTAGTGACAGTCCAGACCTAG 47935
|||| ||| | |||||| |||||| || ||| | |||| | || |||||||| |
Sbjct 58281070 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 58281011
Query 47936 GAGCTATTCTACCATAGCA 47954
|||||| ||| ||||| ||
Sbjct 58281010 GAGCTACTCT-CCATAACA 58280993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718176556329360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |