Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq24 396 4e-105 seq1 159 5e-34 seq12 114 2e-20 seq2 100 4e-16 seq20 89.7 7e-13 >seq24 Length=155392059 Score = 396 bits (438), Expect = 4e-105 Identities = 657/941 (70%), Gaps = 26/941 (3%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| |||||| ||| || | |||| ||| |||| | || |||| |||||||| Sbjct 44583431 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44583490 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || || || || | | || || || ||||| |||| | ||| ||||| | Sbjct 44583491 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44583545 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 || | || ||||| || | || ||| || |||| |||| ||| || | Sbjct 44583546 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44583605 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || ||||| || || ||| ||||| | |||||||| || || || | Sbjct 44583606 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44583665 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | ||| | || || ||||||||||| || || |||| | || || Sbjct 44583666 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44583725 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGA 49966 ||| || ||||| | | || ||| | | | | ||||| |||||||| || || | Sbjct 44583726 CTCTCAC--TTTCTCCTC-CGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAA 44583782 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 |||| ||||| | |||||| ||||| ||||| ||||| |||||||||||||| || |||| Sbjct 44583783 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 44583842 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | || || || || || ||||| ||||| || ||||| || |||||||||||||| |||| Sbjct 44583843 TCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTT 44583902 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACT 50143 ||||||| || ||||| |||| | || ||||| | || |||| ||||| Sbjct 44583903 CTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGC 44583962 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 |||||||| ||| ||| || ||||||||||||||| | |||||||| |||||| Sbjct 44583963 ACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAGAA 44584021 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | | ||||| || |||||| | ||||| || || | |||||||||||||| |||| Sbjct 44584022 ATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44584081 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | |||||||| ||||| || || || || |||||||| | || || |||||||| ||| Sbjct 44584082 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44584141 Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383 | | |||||| || | ||||||||||| ||||| || ||||| |||||||| || Sbjct 44584142 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44584201 Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG---- 50439 ||| ||||| |||||||| | | || | ||| || | ||||| || || Sbjct 44584202 CCAGAACATGGGATATAAAATATCTCTCCTCGGG-CTTCGGGGATTCC---CAGTGCCGA 44584257 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 || || || || | || || || || ||||| || || ||||| ||||| |||||| Sbjct 44584258 ATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATAC 44584317 Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || | |||||| ||||| || | || ||||| || ||||| Sbjct 44584318 ATCTGCCAGATATCATGGTACTCGACGGGGAAGATGACAAA 44584358 Score = 201 bits (222), Expect = 2e-46 Identities = 319/451 (71%), Gaps = 20/451 (4%) Strand=Plus/Minus Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 ||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 143818010 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 143817951 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 || | || || ||||| ||||| | ||||| || |||||||||||| | | ||| || Sbjct 143817950 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACC 143817891 Query 50092 GCGGCAAAGGC-------AACAAGTCTCTCTCCAT----AACTGGCGCTGTCATGTATCC 50140 ||||||||| |||| || ||||||| ||| | | ||| |||| Sbjct 143817890 AAGGCAAAGGCTGCATGCAACACGT---TCTCCATGGGTAAC-GTCTTTGTTCCCAATCC 143817835 Query 50141 A-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 | | || ||||| | |||||||| || ||||| ||||||||||| |||||| | ||| Sbjct 143817834 AACACAAGA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGCACTGAAG 143817777 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 ||| | | |||| || |||||||| ||| || || || | ||| ||| ||||| Sbjct 143817776 AGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCA 143817719 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 ||||| |||||||| || || || || || || ||||| || | || |||||| | Sbjct 143817718 GAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCCGA 143817659 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 |||||| | |||| |||| | || ||||||| | ||| || |||| |||||||| Sbjct 143817658 ACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCAAAT 143817599 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTT 50410 || |||| | ||| |||||||| | ||| Sbjct 143817598 AAAGCCAGAATATGGGATATAAAATATCTTT 143817568 >seq1 Length=229774977 Score = 159 bits (176), Expect = 5e-34 Identities = 238/336 (71%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC--- 50128 |||| ||||| |||| ||||| |||||||| |||| | || ||||| | || Sbjct 140699552 AAAAAAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 140699611 Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 |||| || || | ||||||| |||||||| |||||||| ||||| | Sbjct 140699612 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAA 140699665 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 ||| || |||||| | | |||| || |||||| | ||||| || || | |||| Sbjct 140699666 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140699725 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 |||||||||| ||||| ||||||| ||||| || || || | |||||||| | || | Sbjct 140699726 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140699785 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | |||||||| |||||| | |||||| || | || |||||||| ||||| || |||| Sbjct 140699786 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 140699845 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 50404 | |||||||| || |||| ||| | |||||||| Sbjct 140699846 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140699881 >seq12 Length=134183262 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||| | Sbjct 4108186 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 4108127 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 4108126 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 4108067 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 4108066 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 4108016 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | ||| Sbjct 4094691 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 4094632 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 4094631 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 4094572 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 4094571 TCCAGGTAAATAGC 4094558 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 4105340 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 4105281 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 4105280 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 4105221 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 4105220 CTGTTTCTTATACCATA 4105204 >seq2 Length=114371477 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 10278080 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10278021 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 10278020 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10277961 >seq20 Length=64411610 Score = 89.7 bits (98), Expect = 7e-13 Identities = 179/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| ||||| Sbjct 58281248 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 58281191 Query 47761 TCCAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATT 47819 || | |||||||||| | | | |||| | | || ||||| || |||| ||| || | || Sbjct 58281190 TCTATTTCTGGATAAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 58281131 Query 47820 T-ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAAT 47878 | || | ||| | ||| | | ||||| || | || || | ||||| ||||||| Sbjct 58281130 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 58281071 Query 47879 CTTCGTCTATTACACCACCTCCTATAT---CAATGCCTTTTAGTGACAGTCCAGACCTAG 47935 |||| ||| | |||||| |||||| || ||| | |||| | || |||||||| | Sbjct 58281070 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 58281011 Query 47936 GAGCTATTCTACCATAGCA 47954 |||||| ||| ||||| || Sbjct 58281010 GAGCTACTCT-CCATAACA 58280993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718176556329360