Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq24 253 2e-62
seq2 120 3e-22
seq1 114 1e-20
>seq24
Length=155392059
Score = 253 bits (280), Expect = 2e-62
Identities = 525/775 (68%), Gaps = 10/775 (1%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371
|| || ||| ||| ||| | |||| ||| || | | | || | || ||||| |
Sbjct 44583433 TAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCCTC 44583492
Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431
||||| || | ||||| | ||||| |||||||| ||| |||||| ||||| |||
Sbjct 44583493 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTCC 44583547
Query 13432 ATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490
|||| || ||||| | | | | ||| ||| | | |||| ||||| | | |
Sbjct 44583548 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAAG 44583606
Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550
||| || || | ||||||||| ||||| ||||| | |||||||| || || || ||
Sbjct 44583607 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44583666
Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609
||||| | | || | ||||||| |||||| ||||| | | | || ||
Sbjct 44583667 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44583726
Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669
||| | | | || | || || | | || ||||| || || || || |||||||
Sbjct 44583727 TCTCACTT-TCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44583785
Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729
|||| || | ||||||||||| ||||||||||| || ||||| || | || |||||||
Sbjct 44583786 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCA 44583845
Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789
||||||||| || | ||| ||||| | || || || || |||||||| || || || |
Sbjct 44583846 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44583905
Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849
||||||| || |||| | ||||| ||| | | || | ||||| |||||
Sbjct 44583906 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACA 44583965
Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909
||||| || | || || | | || ||| | ||| || |||||||| | | ||
Sbjct 44583966 AGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAATT 44584024
Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969
|||| ||||| | | | ||||| || |||||||| | |||||||||||||| ||||
Sbjct 44584025 CCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44584084
Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029
||||||| || || || || || ||||| ||||| | ||||||| || ||
Sbjct 44584085 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44584144
Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084
| ||||| || |||| |||||||| || || |||||||| |||||||| ||
Sbjct 44584145 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44584199
Score = 134 bits (148), Expect = 1e-26
Identities = 303/444 (68%), Gaps = 15/444 (3%)
Strand=Plus/Minus
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|| ||||| | ||| || | |||||||| || ||||||||||| || |||||||| |
Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779
|| ||||||| |||| |||| || | ||| ||||| || || || || ||||||||
Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903
Query 13780 ATTCCCTCAACTGCAGCAAACGCT--ATT--AGTCGTTCTCCAAACGATGCTTTTTTGTT 13835
| | || || ||||| ||| || | ||||||||| | | | ||||||
Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 143817843
Query 13836 TGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894
||||| | || |||| | | || || || | | | | || ||||| || |
Sbjct 143817842 CCCAATCCAACA-CAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAATGG 143817785
Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTA 13953
|| |||| | | |||| | ||||| || ||| || ||||| |||||||| | ||
Sbjct 143817784 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGATTA 143817728
Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14013
| |||||||| ||||||||||||||||| || || || ||||| || || | ||||
Sbjct 143817727 TTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCT 143817668
Query 14014 GACCATTGTACCTCCGAGTA-AAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACT 14072
| || | || | | | |||| ||| |||||||||||| | || |||||||
Sbjct 143817667 G-TAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACA 143817609
Query 14073 AGCTGCAAAAAATGCC--AATATG 14094
|||||||| || ||| ||||||
Sbjct 143817608 TGCTGCAAATAAAGCCAGAATATG 143817585
>seq2
Length=114371477
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 10280454 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10280395
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || ||||||||||| || || || ||||||||||| |
Sbjct 10280394 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10280335
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||| ||
Sbjct 10280334 CTACAACACGTTCACC 10280319
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 10282606 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 10282548
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 10282547 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 10282488
Query 13431 CATAAAATCGAATGGATT 13448
|||||| || ||||| ||
Sbjct 10282487 CATAAAGTCAAATGGGTT 10282470
Score = 82.4 bits (90), Expect = 7e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989
||||| || |||||||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 10278073 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 10278014
Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014
|| ||||| ||||| | |||||||
Sbjct 10278013 AAGCCATAGAAACAGCGGGCTTCTG 10277989
>seq1
Length=229774977
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 13884 TGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943
|||||| || | ||||| | | |||| | ||||| | | | ||||| || |||||
Sbjct 140699658 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAAT 140699717
Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003
||| | |||||||||||||| ||| ||||||| || || || || || |||| |||||
Sbjct 140699718 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 140699777
Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063
| ||||||| || || || | ||||| || ||||||||||||| || ||
Sbjct 140699778 GCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 140699837
Query 14064 ACCATCACTAGCTGCAAAAAATGCCA 14089
|||||||| |||||||| || ||||
Sbjct 140699838 GCCATCACTTGCTGCAAAGAAAGCCA 140699863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478527337233360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |