Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_004065.1 Length=230278 Score E Sequences producing significant alignments: (Bits) Value seq2750 120 4e-22 >seq2750 Length=44035 Score = 120 bits (132), Expect = 4e-22 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 151997 GACGTCGCCCACAACTGGGTCATGTTCATCAACAACAAGCGCTGCCTCGACCTCGAGTTC 152056 ||||| |||| |||||||| | | ||||||||||||||||||||| |||| || |||| Sbjct 4745 GACGTGGCCCGCAACTGGGCCCTCTTCATCAACAACAAGCGCTGCACCGACGTCCAGTTT 4686 Query 152057 GGCGACCTGCTCAAGCACATCGAGTTCGGGCTGCCCCTCAAGTCCGAGCACGTCGAGTAC 152116 || |||| | ||| | |||||| ||| || ||| | | ||| | | | ||| Sbjct 4685 GGGCACCTCATGAAGACCCTCGAGTACGGCCTCGAGCTCTCGCCGGAGATCCTGGCCTAC 4626 Query 152117 CTCGACAGGTTCGTGCGCCCC--GCCGGCCTCATCAGGGACCCGGCGCACGCCATCGATG 152174 ||||| | ||||| |||| | |||| ||||| |||||| ||||| | | | Sbjct 4625 GTCGACCGCTTCGTCGTCCCCAGGGCGGC--CATCATGGACCCCGCGCAGTACGTGGGCT 4568 Query 152175 TCACCCGCCTCTTCATCTCGCACGCCGAGGTCAAGAGGTACTTCACGGCGCTCCACG 152231 ||||| |||||| |||| |||||||||||||||| | | |||| | ||||||| Sbjct 4567 GGACCCGGCTCTTCCTCTCCCACGCCGAGGTCAAGACCTTCCTCACCACCCTCCACG 4511 Score = 105 bits (116), Expect = 1e-17 Identities = 167/231 (72%), Gaps = 14/231 (6%) Strand=Plus/Minus Query 132550 TGCTCCTCGCACACGTAGGATACCACGTTCAGCATGTCGAA---GGGCGCCGAGGTCAGC 132606 ||||||| ||||| || |||||||||||||| | || | ||| | ||||| Sbjct 20597 TGCTCCTGACACACATAACTTACCACGTTCAGCA-GCCGCTCCTGAGCGTCCT--TCAGC 20541 Query 132607 TTCGTCAGGAAGCAGGTG--CTG-TCGCTCGTCGTGTTGGTCGACGAGATGAAGATGATC 132663 || || |||| |||| ||| ||| | || ||| |||||||||||||||||| Sbjct 20540 TTATAAAGAAAGCTGGTGGCCTGGTCG---GCCGAGTTTACGGACGAGATGAAGATGATC 20484 Query 132664 TTCGTCGTG-TTCTGGGCCAGGAAGCCCAGGATCGTGTTAAAGGCCTCCTTCTTGATGAA 132722 || | ||| ||||| || ||||||||||||| | ||||||||||||||| || Sbjct 20483 TTGG-CGTCCTTCTGAAGCATAAAGCCCAGGATCGCCGGCAGGGCCTCCTTCTTGATAAA 20425 Query 132723 GTGTGCCTCGTCCACGATCAAGAGGTTGAAGTTCTGCCCGCGGATGCTCTG 132773 || ||||| ||||| | |||||||| || ||||||| || |||||||| Sbjct 20424 GTTGGCCTCATCCACAAACAAGAGGTGAAATGTCTGCCCCCGAATGCTCTG 20374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736666981391520