Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_004812.1 Length=156789 Score E Sequences producing significant alignments: (Bits) Value seq2750 104 2e-17 >seq2750 Length=44035 Score = 104 bits (114), Expect = 2e-17 Identities = 309/459 (67%), Gaps = 22/459 (5%) Strand=Plus/Plus Query 13655 AACAGCCGCGTCCACCCGGGCAGGT--TG-GCCGGGTTCGTGATGAA-GCTCTCGGGCAC 13710 || ||||| ||||| || || || || || |||| | ||||| || || ||| || Sbjct 4555 AAGAGCCGGGTCCAGCC---CACGTACTGCGCGGGGTCCATGATGGCCGCCCTGGGG-AC 4610 Query 13711 CACGAAGCGGTCGACGAACTGCATGTGCTCCTCGGTCAGCGGGAGGCCGTACTCGAGCGC 13770 ||||||||||||||| | || | |||| | ||| ||||||||||||||| | Sbjct 4611 GACGAAGCGGTCGACGTAGGCCAGGATCTCCGGCGAGAGCTCGAGGCCGTACTCGAGGGT 4670 Query 13771 CTTCATGAGGTTGCCGAACTCGTGCTCCACGCACCGTTTGTTGTTGATGAAGATGGCCCA 13830 ||||||||||| || |||| | || ||| || |||||||||||||||| |||||| Sbjct 4671 CTTCATGAGGTGCCCAAACTGGACGTCGGTGCAGCGCTTGTTGTTGATGAAGAGGGCCCA 4730 Query 13831 GCTCCGCGGCAGCCGGGCGTACTCCCGCAGG--GTCCGGTTGCAGATGAGGTACGTCAGG 13888 | | || | || |||| || ||| | |||||| | ||| | || ||| Sbjct 4731 GTTGCGGGCCACGTCCACGTAGGCC--GAGGCCCTGGGGTTGCCCACCAGGAAGGTGAGG 4788 Query 13889 ACGTTCTCGCTCTGCCGGATC--GAGCACCTCAGCTTCTGGTGCTCGAACGTCGACTCGA 13946 | ||| |||| || || ||| | |||| | ||| ||| || | |||| || Sbjct 4789 ATGTTGTCGCACTCGCGAATCTTGTTGACCT--GGGTCTCGTGGCTAAAGGAGGACT-GA 4845 Query 13947 GCGACG-CGGTCTGCGTGGGCGAGCCCACGCAGACCA-ACACGGGGCGCAGCCCGGCCGC 14004 | || ||||||| || || || ||||||||||| | || ||| ||| ||| | || Sbjct 4846 AAGGCGTCGGTCTGGGTCGGGGATCCCACGCAGACTATGCAGGGGACGCGGCCTCGGCG- 4904 Query 14005 GTACTGCGGCGTGTG-ATACAGCGCGTTGGTCATCCACCAGCAGTACACCACGGCCGTCA 14063 |||| | || ||| | | ||| |||||| | ||| |||| | |||||||| |||| Sbjct 4905 GTACAGGGGGGTGCGCAGCCAG-GCGTTGAAGAACCAGTAGCAAAAGACCACGGCGGTCA 4963 Query 14064 GCAGGTGCCGGCCCAGAAGCCCCGCCTCGTCGATCACGA 14102 | | ||| | || ||| |||||||| | ||||| Sbjct 4964 GAATGTGGACGGAGAGCGTCCCGGCCTCGTCCACCACGA 5002 Score = 102 bits (112), Expect = 8e-17 Identities = 209/307 (68%), Gaps = 24/307 (8%) Strand=Plus/Plus Query 33660 CGGCCTCATGGCCCCCGAGCTCTACGTGTACGTGGACCCCGCCTTCACCGCCAACACGCG 33719 ||| | | ||||| || ||||||||||||||||| || |||| ||| |||||| Sbjct 20847 CGGGCGCCTGGCCTCCTCCCTCTACGTGTACGTGGATCCGGCCTATACCAACAACACCTC 20906 Query 33720 CGCCTCGGGCACCGGCGTCGCGGCCGTCGGCCGCTACCG--CGA---CGAC----TTCAT 33770 |||||| ||||||||| |||| ||||| || | || | ||| |||| |||| Sbjct 20907 CGCCTCCGGCACCGGCATCGCCGCCGTGACCCACGACAGGTCGAACCCGACCAGGGTCAT 20966 Query 33771 CGTCTTCGCCCTAGAGCACTTCTTCCTGCGGGCCCTCACGGGCTCGGCGGCCGACGACAT 33830 |||| | | ||| || |||||||||||| || ||| ||||| || ||| | | || Sbjct 20967 CGTCCTAGGCCTGGAACACTTCTTCCTGAAGGACCTGACGGGGGACGCCGCCCTCCAGAT 21026 Query 33831 CGCCCGCTGCGCC---GCCCACAGCCTCACGCAGGTC---CTGGCCCTCCACCCCGGGGT 33884 |||| |||||| |||| || | | || ||| ||| || |||| | || Sbjct 21027 CGCCACGTGCGCCGTGGCCCTCATCTCCTCGATCGTCACGCTGCACCCCCACTTTGAGGA 21086 Query 33885 GTTCCGCAGCGTCCGCGTGGCGGTGGAGGGCAACAGCAGCCAGGACTCGGCCGTCGCGAT 33944 | || || | || |||||||||||||| ||||||||||| || || || || Sbjct 21087 G--GCGAAG-------ATAGCAGTGGAGGGCAACAGTAGCCAGGACTCTGCGGTAGCCAT 21137 Query 33945 CGCCGCC 33951 |||| || Sbjct 21138 CGCCTCC 21144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501532382430960