Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq24 266 3e-66 seq1 111 1e-19 seq9 102 7e-17 seq2 82.4 7e-11 >seq24 Length=155392059 Score = 266 bits (294), Expect = 3e-66 Identities = 574/851 (67%), Gaps = 18/851 (2%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| ||||| | ||||| ||||| || |||| | |||||||| ||| Sbjct 44583493 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTCC 44583547 Query 12923 ATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 |||| || || || | | | | | | || | | |||| | ||| || | | Sbjct 44583548 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCC-AGTTCCAGCATAAG 44583606 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || |||||||| ||||| || ||||||| | || ||||| || || | || Sbjct 44583607 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44583666 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| || || || | || | || |||||| | ||| || | ||||| ||| || Sbjct 44583667 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44583726 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 ||| | | | ||| |||| | | || || || ||||||| || |||||||| Sbjct 44583727 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44583786 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| || || |||||||| || || || || || ||||| || || || ||||| || Sbjct 44583787 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 44583846 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||||||| || | ||| ||||| | ||||| ||||| ||||| || || ||||| || Sbjct 44583847 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44583906 Query 13282 TGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTC 13340 ||| || || |||| |||| | ||||||||| ||| | ||| | | ||||| Sbjct 44583907 TGCAGCGAAGGCTA-CAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACA 44583965 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 |||||| | ||| | || || || ||| ||| || || || || | | | | Sbjct 44583966 AGGCCCAATCTGCCGCCTTCTTGACACAAGGCAT-CGTTCAATGGCATTGAAGAGAAATT 44584024 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 ||||| || ||| || ||||| || || | | ||||||||||| ||||| | Sbjct 44584025 CCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44584084 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 | |||||||| || |||||||| ||||| ||||| | || |||| | ||||||| Sbjct 44584085 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44584144 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | ||||| || | || ||||| || ||||| || ||||| || ||||| ||| | | Sbjct 44584145 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44584204 Query 13581 GTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGGAAAA 13636 | | || ||||| | | | || | ||| | | | ||| | ||| Sbjct 44584205 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGA----TTCCCAGTGCCGAATG 44584260 Query 13637 TCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATC 13696 || || || | || |||||||| |||||| || ||||| | ||||||||||||||| Sbjct 44584261 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44584320 Query 13697 ATCCATATATC 13707 ||| ||||| Sbjct 44584321 TGCCAGATATC 44584331 >seq1 Length=229774977 Score = 111 bits (122), Expect = 1e-19 Identities = 220/321 (69%), Gaps = 10/321 (3%) Strand=Plus/Plus Query 13263 aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTT 13321 ||||||| || |||| ||||| ||||| |||| |||| | ||||||||| ||| | | Sbjct 140699552 AAAAAAAGATATCTTCCACTGCAGCAAAGGCTA-CAACACATTCACCATAGGTAGCCTCT 140699610 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT-TTTC 13380 || | | || || | |||||| ||||| || | | || || | | |||| Sbjct 140699611 TTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCT---TGACACA----AGGTGTTTC 140699663 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 || | ||| || | | | | |||| || ||| || ||||| || || | | Sbjct 140699664 AATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAG 140699723 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 ||||||||||| ||||| | |||||||| || |||||||| |||| ||||| | || Sbjct 140699724 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGC 140699783 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 |||| | ||||||||| | ||||| || | |||||||| || ||||| || || Sbjct 140699784 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 140699843 Query 13561 ACTAGCAGCaaaaaaaGCAAG 13581 ||| || ||||| ||||| || Sbjct 140699844 ACTTGCTGCAAAGAAAGCCAG 140699864 >seq9 Length=144709823 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || ||||| || ||||| || || || |||||||| |||| || | Sbjct 101030341 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 101030400 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || ||||| | Sbjct 101030401 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 101030460 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 101030461 CCACCACTCTTTCCCC 101030476 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 101019760 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 101019819 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 101019820 ATAAAATCAAAAGGATTTT 101019838 >seq2 Length=114371477 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 10278073 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 10278015 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 10278014 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 10277976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430928434808148