Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq873 250 2e-61
seq1 104 2e-17
>seq873
Length=4833
Score = 250 bits (276), Expect = 2e-61
Identities = 297/403 (74%), Gaps = 0/403 (0%)
Strand=Plus/Minus
Query 128764 ACATGCTCAGAGAACTCAGGGCCGCGTTCGGAAAGGTAAAAACTTTCTTCCAGATGAAAG 128823
||||||| || || || || | || ||| | || ||||| |||||||||||||| |
Sbjct 2749 ACATGCTAAGGGACCTGAGAGATGCCTTCAGTCGCGTTAAAACCTTCTTCCAGATGAAGG 2690
Query 128824 ACCAACTGAACAGTATGCTACTCACACAGTCGCTCCTCGACGACTTCAAAGGCTACCTCG 128883
| | || | | ||| | |||| |||| || || || || || ||||||||||| |
Sbjct 2689 ATGGAATGGATAATATTTTGCTCAAGGAGTCTCTGCTGGAGGATTTTAAAGGCTACCTTG 2630
Query 128884 GGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATGCCGCAGGCGG 128943
| || ||||| ||||| |||||||| || ||||| |||| || || ||||| ||||| |
Sbjct 2629 GATGTCAGGCCCTCTCAGAGATGATTCAATTTTATCTGGAGGAAGTTATGCCACAGGCTG 2570
Query 128944 AAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAGCTCAAAACGC 129003
|||| || | || | |||||| || ||||| ||||| ||||| || || || |
Sbjct 2569 AAAACCAGGACCCACTAGCCGCAGAGCATGTGAACTCTCTGGGTGAAAATCTAAAGACCC 2510
Query 129004 TGCGTCTTCGACTGCGTCGCTGCCACCGCTTCCTGCCGTGTGAGAACAAGAGTAAGGCCG 129063
| | || || ||||| | |||||| | || || ||||||||||||||||| || || |
Sbjct 2509 TAAGGCTCCGCCTGCGCAGGTGCCACAGGTTTCTACCGTGTGAGAACAAGAGCAAAGCTG 2450
Query 129064 TGGAGCAAGTCAAACGCGTGTTCAACATGCTGCAGGAACGAGGCGTTTACAAGGCCATGA 129123
| ||||| || ||| | ||||||| |||||||||| ||| | ||||| |||||||
Sbjct 2449 TAGAGCAGGTTAAAAATGCCTTCAACAAGCTGCAGGAAAAAGGAATCTACAAAGCCATGA 2390
Query 129124 GCGAGTTCGACATATTCATCAACTACATAGAATCATACATGAC 129166
| || || ||||| || || |||||||||||| ||||||||||
Sbjct 2389 GTGAATTTGACATTTTTATTAACTACATAGAAGCATACATGAC 2347
>seq1
Length=229774977
Score = 104 bits (114), Expect = 2e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933
|| ||||| || ||||| || | ||||||||||| ||||||||| |||| |||||||||
Sbjct 186651738 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 186651679
Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993
|| || || || || || | || |||||||| | ||| || ||||| ||||| || ||
Sbjct 186651678 CCCCAAGCTGAGAACCAAGACCCAGACATCAAGGTGCATGTGAACTCCCTGGGGGAGAAC 186651619
Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025
|| || || || | || | || || |||||
Sbjct 186651618 CTGAAGACCCTCAGGCTGAGGCTACGGCGCTG 186651587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447692897654880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |