Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq873 250 2e-61 seq1 104 2e-17 >seq873 Length=4833 Score = 250 bits (276), Expect = 2e-61 Identities = 297/403 (74%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 128764 ACATGCTCAGAGAACTCAGGGCCGCGTTCGGAAAGGTAAAAACTTTCTTCCAGATGAAAG 128823 ||||||| || || || || | || ||| | || ||||| |||||||||||||| | Sbjct 2749 ACATGCTAAGGGACCTGAGAGATGCCTTCAGTCGCGTTAAAACCTTCTTCCAGATGAAGG 2690 Query 128824 ACCAACTGAACAGTATGCTACTCACACAGTCGCTCCTCGACGACTTCAAAGGCTACCTCG 128883 | | || | | ||| | |||| |||| || || || || || ||||||||||| | Sbjct 2689 ATGGAATGGATAATATTTTGCTCAAGGAGTCTCTGCTGGAGGATTTTAAAGGCTACCTTG 2630 Query 128884 GGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATGCCGCAGGCGG 128943 | || ||||| ||||| |||||||| || ||||| |||| || || ||||| ||||| | Sbjct 2629 GATGTCAGGCCCTCTCAGAGATGATTCAATTTTATCTGGAGGAAGTTATGCCACAGGCTG 2570 Query 128944 AAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAGCTCAAAACGC 129003 |||| || | || | |||||| || ||||| ||||| ||||| || || || | Sbjct 2569 AAAACCAGGACCCACTAGCCGCAGAGCATGTGAACTCTCTGGGTGAAAATCTAAAGACCC 2510 Query 129004 TGCGTCTTCGACTGCGTCGCTGCCACCGCTTCCTGCCGTGTGAGAACAAGAGTAAGGCCG 129063 | | || || ||||| | |||||| | || || ||||||||||||||||| || || | Sbjct 2509 TAAGGCTCCGCCTGCGCAGGTGCCACAGGTTTCTACCGTGTGAGAACAAGAGCAAAGCTG 2450 Query 129064 TGGAGCAAGTCAAACGCGTGTTCAACATGCTGCAGGAACGAGGCGTTTACAAGGCCATGA 129123 | ||||| || ||| | ||||||| |||||||||| ||| | ||||| ||||||| Sbjct 2449 TAGAGCAGGTTAAAAATGCCTTCAACAAGCTGCAGGAAAAAGGAATCTACAAAGCCATGA 2390 Query 129124 GCGAGTTCGACATATTCATCAACTACATAGAATCATACATGAC 129166 | || || ||||| || || |||||||||||| |||||||||| Sbjct 2389 GTGAATTTGACATTTTTATTAACTACATAGAAGCATACATGAC 2347 >seq1 Length=229774977 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 186651738 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 186651679 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || || | || |||||||| | ||| || ||||| ||||| || || Sbjct 186651678 CCCCAAGCTGAGAACCAAGACCCAGACATCAAGGTGCATGTGAACTCCCTGGGGGAGAAC 186651619 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | || || ||||| Sbjct 186651618 CTGAAGACCCTCAGGCTGAGGCTACGGCGCTG 186651587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447692897654880