Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq873 215 4e-51
seq1 96.9 3e-15
>seq873
Length=4833
Score = 215 bits (238), Expect = 4e-51
Identities = 272/369 (74%), Gaps = 6/369 (2%)
Strand=Plus/Minus
Query 127087 GTCAAAACATTTTTTCAGATGAAAGATCAGTTACATAGTTTGCTTCTCACACAGTCTCTT 127146
|| ||||| || || |||||||| ||| | ||| | | | |||| |||||||
Sbjct 2714 GTTAAAACCTTCTTCCAGATGAAGGATGGAATGGATAATATTTTGCTCAAGGAGTCTCTG 2655
Query 127147 TTGGATGACTTCAAAGGCTATTTAGGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTAC 127206
|||| || || |||||||| | || || || || || || ||||||||||| || ||
Sbjct 2654 CTGGAGGATTTTAAAGGCTACCTTGGATGTCAGGCCCTCTCAGAGATGATTCAATTTTAT 2595
Query 127207 CTCGAAGAGGTCATGCCACAGGCAGAAAATCACGGACCCGACATAAA---AGAACACGTC 127263
|| || || || ||||||||||| ||||| || |||||| || || ||| || ||
Sbjct 2594 CTGGAGGAAGTTATGCCACAGGCTGAAAACCA-GGACCC-AC-TAGCCGCAGAGCATGTG 2538
Query 127264 AATTCCCTGGGTGAAAAGCTGAAGACATTGAGACTTCGACTGCGTCGCTGCCACCGCTTT 127323
|| || ||||||||||| || ||||| | || || || ||||| | |||||| | |||
Sbjct 2537 AACTCTCTGGGTGAAAATCTAAAGACCCTAAGGCTCCGCCTGCGCAGGTGCCACAGGTTT 2478
Query 127324 CTCCCGTGCGAGAACAAGAGCAAGGCGGTGGAAAAGGTGAAGAGAGTGTTCAGCGAGCTT 127383
|| ||||| |||||||||||||| || || || |||| || | | |||| | ||||
Sbjct 2477 CTACCGTGTGAGAACAAGAGCAAAGCTGTAGAGCAGGTTAAAAATGCCTTCAACAAGCTG 2418
Query 127384 CAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACATCGAG 127443
||||||| ||| | ||||| ||||||||||| |||||||| || || |||||||| ||
Sbjct 2417 CAGGAAAAAGGAATCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACATAGAA 2358
Query 127444 ACTTACATG 127452
| ||||||
Sbjct 2357 GCATACATG 2349
>seq1
Length=229774977
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230
|| |||||||| ||||||||||||| ||||| ||||| || ||||| ||||| || ||
Sbjct 186651729 GGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATGCCCCAAGCT 186651670
Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290
|| || || | || ||||| || | || || || |||||||| || || ||||||||
Sbjct 186651669 GAGAACCAAGACCCAGACATCAAGGTGCATGTGAACTCCCTGGGGGAGAACCTGAAGACC 186651610
Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313
| || || | || || |||||
Sbjct 186651609 CTCAGGCTGAGGCTACGGCGCTG 186651587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430000551007088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |