Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq873 215 4e-51 seq1 96.9 3e-15 >seq873 Length=4833 Score = 215 bits (238), Expect = 4e-51 Identities = 272/369 (74%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 127087 GTCAAAACATTTTTTCAGATGAAAGATCAGTTACATAGTTTGCTTCTCACACAGTCTCTT 127146 || ||||| || || |||||||| ||| | ||| | | | |||| ||||||| Sbjct 2714 GTTAAAACCTTCTTCCAGATGAAGGATGGAATGGATAATATTTTGCTCAAGGAGTCTCTG 2655 Query 127147 TTGGATGACTTCAAAGGCTATTTAGGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTAC 127206 |||| || || |||||||| | || || || || || || ||||||||||| || || Sbjct 2654 CTGGAGGATTTTAAAGGCTACCTTGGATGTCAGGCCCTCTCAGAGATGATTCAATTTTAT 2595 Query 127207 CTCGAAGAGGTCATGCCACAGGCAGAAAATCACGGACCCGACATAAA---AGAACACGTC 127263 || || || || ||||||||||| ||||| || |||||| || || ||| || || Sbjct 2594 CTGGAGGAAGTTATGCCACAGGCTGAAAACCA-GGACCC-AC-TAGCCGCAGAGCATGTG 2538 Query 127264 AATTCCCTGGGTGAAAAGCTGAAGACATTGAGACTTCGACTGCGTCGCTGCCACCGCTTT 127323 || || ||||||||||| || ||||| | || || || ||||| | |||||| | ||| Sbjct 2537 AACTCTCTGGGTGAAAATCTAAAGACCCTAAGGCTCCGCCTGCGCAGGTGCCACAGGTTT 2478 Query 127324 CTCCCGTGCGAGAACAAGAGCAAGGCGGTGGAAAAGGTGAAGAGAGTGTTCAGCGAGCTT 127383 || ||||| |||||||||||||| || || || |||| || | | |||| | |||| Sbjct 2477 CTACCGTGTGAGAACAAGAGCAAAGCTGTAGAGCAGGTTAAAAATGCCTTCAACAAGCTG 2418 Query 127384 CAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACATCGAG 127443 ||||||| ||| | ||||| ||||||||||| |||||||| || || |||||||| || Sbjct 2417 CAGGAAAAAGGAATCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACATAGAA 2358 Query 127444 ACTTACATG 127452 | |||||| Sbjct 2357 GCATACATG 2349 >seq1 Length=229774977 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| ||||||||||||| ||||| ||||| || ||||| ||||| || || Sbjct 186651729 GGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATGCCCCAAGCT 186651670 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || || | || ||||| || | || || || |||||||| || || |||||||| Sbjct 186651669 GAGAACCAAGACCCAGACATCAAGGTGCATGTGAACTCCCTGGGGGAGAACCTGAAGACC 186651610 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | || || | || || ||||| Sbjct 186651609 CTCAGGCTGAGGCTACGGCGCTG 186651587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430000551007088