Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1 179 5e-40 seq10 132 7e-26 seq2750 93.3 6e-14 >seq1 Length=229774977 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||| ||||| || |||| || |||||||| ||| Sbjct 166360508 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 166360567 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 166360568 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 166360627 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 ||| || || ||||| | || | || || || |||| ||||| |||||||| | Sbjct 166360628 AACTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 166360687 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 166360688 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 166360736 Score = 159 bits (176), Expect = 5e-34 Identities = 229/323 (71%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 8654 TTGAGGAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTA 8713 |||| |||||| || ||||| | ||| | | || ||||| || || ||||| | Sbjct 166358476 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 166358535 Query 8714 CAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAG 8773 |||| |||||||| || | ||| | |||| ||| ||| ||||| ||||| || || Sbjct 166358536 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 166358595 Query 8774 GTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAA 8833 ||||| || |||||||| | || || || || || || |||| || ||||| | ||| Sbjct 166358596 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 166358655 Query 8834 AACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8893 || || || || | || | ||| ||||||| |||||||| | || || |||||||| Sbjct 166358656 AATGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGCCGAGGCTTTTCT 166358715 Query 8894 ACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCG 8953 |||| | | | |||| ||||||||| |||||||| || || || || | || Sbjct 166358716 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 166358775 Query 8954 GCAGCGATTTCCTTTTCTCCTGT 8976 |||| ||||||||||||||||| Sbjct 166358776 GCAGACATTTCCTTTTCTCCTGT 166358798 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| || || ||||| || || |||||| ||| ||| | || Sbjct 166361661 TCTTACCCCATGGCCCAGCCCGTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 166361720 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || |||||||| | ||| | |||||||||||| Sbjct 166361721 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 166361780 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | ||||| ||||||||||| | | ||| || || | Sbjct 166361781 AGGGATGAACTTTCTTCTTAGAAGTAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 166361840 Query 10208 ttttttACCTGGTGAACGAGAA 10229 |||||||||| || ||||| Sbjct 166361841 CTTTTTACCTGAAAAATGAGAA 166361862 Score = 109 bits (120), Expect = 8e-19 Identities = 118/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 10287 TCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGC 10345 ||||||||||| |||||| ||||| || || || | ||| || ||||| || || | Sbjct 166362275 TCACCTTTGACACCCAAG-GGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTAGT 166362333 Query 10346 GTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGAT 10405 ||||||||||| || ||||| |||||||||||| ||| | ||||| || ||||| | Sbjct 166362334 ATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGT 166362393 Query 10406 GGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 166362394 TGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 166362427 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 166359914 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 166359973 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||| || |||||||| | || ||| || ||| || || | || ||| | Sbjct 166359974 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTATTTCTGGTCATGAATTT 166360031 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| || | |||||||||||| | ||||||| || | | |||| Sbjct 166360032 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAATTCAGCAGCAATAC 166360091 Query 9500 GATTTTGGTACTGGAA 9515 ||||||| |||||||| Sbjct 166360092 GATTTTGATACTGGAA 166360107 >seq10 Length=138149186 Score = 132 bits (146), Expect = 7e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||||| ||| ||||| || ||||| || ||||| || |||||||| |||| | Sbjct 121858404 TCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 121858345 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 121858344 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 121858285 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | ||| | ||| ||||||| Sbjct 121858284 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCAGGGTAGAACTCCA 121858225 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || |||||||| || | || | || || || || ||||| |||||| Sbjct 121858224 ACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 121858169 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || |||||||| |||| | || |||||| | || || || |||| | ||| Sbjct 121847619 GTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 121847562 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 121847561 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 121847502 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | || || |||| |||||| Sbjct 121847501 GGTCAGGTATGAACTTCCTCC 121847481 >seq2750 Length=44035 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 124243 GACGAGATGAAGATGATTTTGGTGGTGTTTTGCGCCAGGAAGCCCAGGATGGTGTTAAAG 124302 ||||||||||||||||| |||| | || || || ||||||||||| | | | Sbjct 20501 GACGAGATGAAGATGATCTTGGCGTCCTTCTGAAGCATAAAGCCCAGGATCGCCGGCAGG 20442 Query 124303 GCCTCCTTCTTGATGAAGTGCGCCTCGTCGACCAGCAGGAGGTGGAAATTCTGTCCGCGA 124362 |||||||||||||| |||| ||||| || || | || |||||| || |||| || ||| Sbjct 20441 GCCTCCTTCTTGATAAAGTTGGCCTCATCCACAAACAAGAGGTGAAATGTCTGCCCCCGA 20382 Query 124363 ATGCTCTGA 124371 ||||||||| Sbjct 20381 ATGCTCTGA 20373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708433807702560