Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq2750 120 3e-22 >seq2750 Length=44035 Score = 120 bits (132), Expect = 3e-22 Identities = 320/483 (66%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 89938 CAGCAACGTCATCGTGATCGACGAGGCCGGGCTGCTCGGGCGGCACCTGCTCACGGCCGT 89997 || ||| || |||||| | |||||||||||| |||| ||| | || || ||||| Sbjct 5013 CACCAATGTGATCGTGGTGGACGAGGCCGGGACGCTCTCCGTCCACATTCTGACCGCCGT 4954 Query 89998 CGTCTACTGCTGGTGGCTGATCAACGCCGCG-TACGACACGACGCAGTACGCGGCNNNNN 90056 |||| |||| ||| | |||||||| | | || ||| | | |||| || | Sbjct 4953 GGTCTTTTGCTACTGGTTCTTCAACGCCTGGCTGCG-CACCCCCCTGTAC-CGCCGAGGC 4896 Query 90057 NNNNNNNNGTGC-TCGTCTGTGTGGGCTCGCCCACGCAGACGGACTCGCTCGAGTCGCGC 90115 ||| | ||||| ||||| || || || ||||| ||| | | |||| | Sbjct 4895 CGCGTCCCCTGCATAGTCTGCGTGGGATCCCCGACCCAGACCGACGCCTTTCAGTCCTCC 4836 Query 90116 TTCGAGCACGCGCGGCAGCTGTGCCGCGTGCGCGCCAGCGAGAACCTGCTCACGTACCTG 90175 || |||| | ||| | | | |||| |||| ||| | ||||| | |||| Sbjct 4835 TTTAGCCACGAGACCCAGGTCAACAAGATTCGCGAGTGCGACAACATCCTCACCTTCCTG 4776 Query 90176 ATCACCAACCGC-GCGCTGCGCGAGTACACGGACCTCTCGCGCAACTGGGCCATCTTCAT 90234 | ||||| | | || || | ||| |||| | | |||||||||||| ||||||| Sbjct 4775 GTGGGCAACCCCAGGGCCTCG-GCCTACGTGGACGTGGCCCGCAACTGGGCCCTCTTCAT 4717 Query 90235 CAACAACAAGCGCTGCCAGGAGTACGAGTTCGGCGAGCTCATGAAGGCGCTCGAGTACGG 90294 |||||||||||||||| || | |||| || | ||||||||| | ||||||||||| Sbjct 4716 CAACAACAAGCGCTGCACCGACGTCCAGTTTGGGCACCTCATGAAGACCCTCGAGTACGG 4657 Query 90295 CCTCCCGCTGACGGACGAGCACCTGCGCCT-CGTCGACAGCTTCGTGGTGCCCGAGGCCT 90353 |||| ||| || ||| |||| |||| ||||||| ||||||| || ||| ||| Sbjct 4656 CCTCGAGCTCTCGCCGGAGATCCTG-GCCTACGTCGACCGCTTCGTCGTCCCCAGGGCGG 4598 Query 90354 ACATCAACAACCCGGCGAACCTGCAGGGCTGGACGCGCCTGTACTCGTCGCACCGCGAGG 90413 ||||| |||| ||| | ||||||||| || || | | || ||| ||||| Sbjct 4597 CCATCATGGACCCCGCGCAGTACGTGGGCTGGACCCGGCTCTTCCTCTCCCACGCCGAGG 4538 Query 90414 TCA 90416 ||| Sbjct 4537 TCA 4535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458888259705840