Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq13 138 1e-27
seq2 107 2e-18
seq9876 98.7 9e-16
seq8 96.9 3e-15
seq10 95.1 1e-14
seq7 87.8 2e-12
>seq13
Length=135337776
Score = 138 bits (152), Expect = 1e-27
Identities = 171/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833
||| || || || ||||| |||| |||||||||| ||| || || || || | ||| ||
Sbjct 126789296 TTAGACACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTA 126789355
Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893
|| || ||| ||| ||||||||||| || ||||||| || || ||||| ||
Sbjct 126789356 GTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTC 126789415
Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953
||||| || ||||| ||||| | || ||||| |||||| ||| |||||| | |
Sbjct 126789416 AGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGG 126789475
Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| |||| |||||||| || ||||| || || ||||| ||||| |||||
Sbjct 126789476 CTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529
Score = 134 bits (148), Expect = 1e-26
Identities = 173/237 (73%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || ||||| | || | ||||| |||||| || || || || || | ||| |
Sbjct 126789523 TTTGCATCCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGT 126789582
Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890
| || || | || || ||| ||||||||||||||| ||||||| || || |||||
Sbjct 126789583 AGTCAGACA--GGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTG 126789640
Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950
|| ||||| || ||||| || || | || ||||||||||| ||| ||||||
Sbjct 126789641 GTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACT 126789700
Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | || || || | |||||||| || ||||| ||||| |||||||||||||||||
Sbjct 126789701 GGGCTCAACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCAT 126789757
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| || |||| ||||| ||| | || || || || || | ||| || ||
Sbjct 116540583 CCACCTCACAGGCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAG 116540642
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| | ||| | ||||||||||||||| || |||| || | | ||||| || || |
Sbjct 116540643 AGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAGG 116540702
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | ||||| || ||||| | | |||||| || | || ||
Sbjct 116540703 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACCGGGCTCCACC 116540762
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || || || || || |||| ||||||||||||
Sbjct 116540763 TCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCAT 116540809
Score = 87.8 bits (96), Expect = 2e-12
Identities = 163/235 (69%), Gaps = 6/235 (3%)
Strand=Plus/Plus
Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC-ACGTTAT 94832
||| || ||||| ||||| || | ||||||| |||| || ||||| | | || ||
Sbjct 42015673 TTAGACACCTCCCCTCAAGTACAGAAACAAGTGCCAAGTGGA--CCTTTGGGGATGTCAT 42015730
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || || |||| ||| ||||| ||||| | | ||||||| || || ||||| |
Sbjct 42015731 AGTCAG--ATGGTGTGCTCATCTTCCAGTTGTTT-CTGGCAAAGATCAACCTCTGCTGGT 42015787
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| || ||| || || ||||| | ||| ||||||||||| | | |||||| |
Sbjct 42015788 CAGGGAGAAGGCCATCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATGGTGTCACTGG 42015847
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | ||| |||| || ||||| || || || | || ||||||||| |||||||
Sbjct 42015848 GCTTGACCTCAAGGGTAATGGTCTTACCTGTCAAGGTGTTCACAAAGTTCTGCAT 42015902
>seq2
Length=114371477
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| |||| ||||| || || || || || | ||| || ||
Sbjct 110580062 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 110580003
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||| |||||||| || || ||||||| | || ||||| || |||||
Sbjct 110580002 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 110579943
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| || || | || || ||||| || ||| |||||| | | || ||
Sbjct 110579942 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 110579883
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || || ||||| |||||||| |||||||||||
Sbjct 110579882 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 110579836
>seq9876
Length=376000
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| |||| |||| |||| || || || || || | ||| || ||
Sbjct 278179 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 278120
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| | || | ||| |||||||| || || ||||||| | | ||||| || | |||
Sbjct 278119 AGACTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGA 278060
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
| |||||||| || | ||||| |||||||| ||| |||| || | | || ||
Sbjct 278059 TTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACT 278000
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||| | || || ||||| |||||||| |||||||||||
Sbjct 277999 TCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 277953
>seq8
Length=162613886
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||||||||||||||| || |||| || | | |||||| || | ||||| || || ||
Sbjct 25941901 ATCCTCCAGCTGTTTGCCCGCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTT 25941960
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | |||||| |||||||| | |||||| | | ||||| || | |||||
Sbjct 25941961 GTCTTGAATTTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGAT 25942020
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || || || || |||||||||||||||||
Sbjct 25942021 GGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25942056
>seq10
Length=138149186
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| || ||| ||||| |||| || | | || || ||||| || ||
Sbjct 22465155 CCACCTCGCAGGTGCAGCACCAGGTGCGGGGTGGGCTGTTTCTGGACGTTGTAGTCTGAG 22465096
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||||||||||||||| | | |||| || | | |||| || || ||
Sbjct 22465095 AGAGTGCGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTTGTCAGGGGGG 22465036
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
||||| || ||||| | |||||| || |||| | | |||||| | | |||||
Sbjct 22465035 ATACCCTCCTTGTCTTGAATTTTCGCACTGACATTCTCAATGGTGTCACTGGGCTCGACC 22464976
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || || || || || |||||||||||||||||
Sbjct 22464975 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 22464929
>seq7
Length=173848474
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| |||||| | || | |||||| |||||||| | | || || || |||
Sbjct 115442962 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGACAAAGTACATCC 115442903
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| || ||||| ||||||| | |||||||||||| |||||||| ||||| ||
Sbjct 115442902 ATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 115442843
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | || || | | || | || | |||||
Sbjct 115442842 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGCCTCGAGGGTGAT 115442783
Query 94972 GGT-TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || |||| |||| |||||||| || ||||||||
Sbjct 115442782 GGTCTTCTCCA-TAAGGGTTTTCACGAAAATCTGCAT 115442747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448233628202640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |