Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13 138 1e-27 seq2 107 2e-18 seq9876 98.7 9e-16 seq8 96.9 3e-15 seq10 95.1 1e-14 seq7 87.8 2e-12 >seq13 Length=135337776 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || || || ||||| |||| |||||||||| ||| || || || || | ||| || Sbjct 126789296 TTAGACACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTA 126789355 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| ||| ||||||||||| || ||||||| || || ||||| || Sbjct 126789356 GTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTC 126789415 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||||| || ||||| ||||| | || ||||| |||||| ||| |||||| | | Sbjct 126789416 AGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGG 126789475 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| |||| |||||||| || ||||| || || ||||| ||||| ||||| Sbjct 126789476 CTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529 Score = 134 bits (148), Expect = 1e-26 Identities = 173/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| | || | ||||| |||||| || || || || || | ||| | Sbjct 126789523 TTTGCATCCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGT 126789582 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || || | || || ||| ||||||||||||||| ||||||| || || ||||| Sbjct 126789583 AGTCAGACA--GGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTG 126789640 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || ||||| || ||||| || || | || ||||||||||| ||| |||||| Sbjct 126789641 GTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACT 126789700 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||||||| || ||||| ||||| ||||||||||||||||| Sbjct 126789701 GGGCTCAACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCAT 126789757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||| ||||| ||| | || || || || || | ||| || || Sbjct 116540583 CCACCTCACAGGCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAG 116540642 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | | ||| | ||||||||||||||| || |||| || | | ||||| || || | Sbjct 116540643 AGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAGG 116540702 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| || ||||| | | |||||| || | || || Sbjct 116540703 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACCGGGCTCCACC 116540762 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || || || |||| |||||||||||| Sbjct 116540763 TCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCAT 116540809 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC-ACGTTAT 94832 ||| || ||||| ||||| || | ||||||| |||| || ||||| | | || || Sbjct 42015673 TTAGACACCTCCCCTCAAGTACAGAAACAAGTGCCAAGTGGA--CCTTTGGGGATGTCAT 42015730 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || |||| ||| ||||| ||||| | | ||||||| || || ||||| | Sbjct 42015731 AGTCAG--ATGGTGTGCTCATCTTCCAGTTGTTT-CTGGCAAAGATCAACCTCTGCTGGT 42015787 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || ||| || || ||||| | ||| ||||||||||| | | |||||| | Sbjct 42015788 CAGGGAGAAGGCCATCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATGGTGTCACTGG 42015847 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||| |||| || ||||| || || || | || ||||||||| ||||||| Sbjct 42015848 GCTTGACCTCAAGGGTAATGGTCTTACCTGTCAAGGTGTTCACAAAGTTCTGCAT 42015902 >seq2 Length=114371477 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| ||||| || || || || || | ||| || || Sbjct 110580062 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 110580003 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || ||||| Sbjct 110580002 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 110579943 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| || ||| |||||| | | || || Sbjct 110579942 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 110579883 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || ||||| |||||||| ||||||||||| Sbjct 110579882 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 110579836 >seq9876 Length=376000 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| |||| || || || || || | ||| || || Sbjct 278179 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 278120 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | | || | ||| |||||||| || || ||||||| | | ||||| || | ||| Sbjct 278119 AGACTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGA 278060 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 | |||||||| || | ||||| |||||||| ||| |||| || | | || || Sbjct 278059 TTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACT 278000 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||| | || || ||||| |||||||| ||||||||||| Sbjct 277999 TCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 277953 >seq8 Length=162613886 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| || |||| || | | |||||| || | ||||| || || || Sbjct 25941901 ATCCTCCAGCTGTTTGCCCGCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTT 25941960 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| |||||||| | |||||| | | ||||| || | ||||| Sbjct 25941961 GTCTTGAATTTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGAT 25942020 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || ||||||||||||||||| Sbjct 25942021 GGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25942056 >seq10 Length=138149186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || ||| ||||| |||| || | | || || ||||| || || Sbjct 22465155 CCACCTCGCAGGTGCAGCACCAGGTGCGGGGTGGGCTGTTTCTGGACGTTGTAGTCTGAG 22465096 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||||||||||||| | | |||| || | | |||| || || || Sbjct 22465095 AGAGTGCGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTTGTCAGGGGGG 22465036 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | |||||| || |||| | | |||||| | | ||||| Sbjct 22465035 ATACCCTCCTTGTCTTGAATTTTCGCACTGACATTCTCAATGGTGTCACTGGGCTCGACC 22464976 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || || || ||||||||||||||||| Sbjct 22464975 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 22464929 >seq7 Length=173848474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | |||||| |||||||| | | || || || ||| Sbjct 115442962 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGACAAAGTACATCC 115442903 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || ||||| ||||||| | |||||||||||| |||||||| ||||| || Sbjct 115442902 ATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 115442843 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | || | || | ||||| Sbjct 115442842 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGCCTCGAGGGTGAT 115442783 Query 94972 GGT-TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || |||| |||| |||||||| || |||||||| Sbjct 115442782 GGTCTTCTCCA-TAAGGGTTTTCACGAAAATCTGCAT 115442747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448233628202640