Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_006560.1
Length=150715
Score E
Sequences producing significant alignments: (Bits) Value
seq2750 149 6e-31
>seq2750
Length=44035
Score = 149 bits (164), Expect = 6e-31
Identities = 352/515 (68%), Gaps = 24/515 (5%)
Strand=Plus/Plus
Query 13934 CTTGAGGTGGGCGTGGAGGCGCGCCATGTAGGCGCTCACCTCCTTGTGCGAGGAGAACAG 13993
|||||| |||||||||| | | | ||| | ||||| ||| ||| ||| ||
Sbjct 4500 CTTGAGCGTGGCGTGGAGGGTGGTGAGGAAGGTCTTGACCTCGGCGTGGGAGAGGAAGAG 4559
Query 13994 CCGCGTCCA-CCCGGGCAGGTTCGCGGGGTTGGTGATGAA-GCTCTCGGGCACCACGAAG 14051
||| ||||| ||| | | | |||||||| ||||| || || ||| || ||||||
Sbjct 4560 CCGGGTCCAGCCCACGTAC-TGCGCGGGGTCCATGATGGCCGCCCTGGGG-ACGACGAAG 4617
Query 14052 CGGTCGACGAACTGCATGTGCTCCTCGGTGAGGGGGAGCCCGTACTCGAGCGCCTTCATG 14111
||||||||| | || | |||| | ||| ||| ||||||||||| | |||||||
Sbjct 4618 CGGTCGACGTAGGCCAGGATCTCCGGCGAGAGCTCGAGGCCGTACTCGAGGGTCTTCATG 4677
Query 14112 AGGTTGCCGAACTCGTGCTCGACGCACCGCTTGTTGTTGATGAAGATGGCCCAGCTCCGC 14171
|||| || |||| | ||| ||| ||||||||||||||||||| ||||||| | ||
Sbjct 4678 AGGTGCCCAAACTGGACGTCGGTGCAGCGCTTGTTGTTGATGAAGAGGGCCCAGTTGCGG 4737
Query 14172 GGCAGCCGCACGTACTCCCGCAGG--GTGCGGTTGCAGATGAGGTACGTGAGCACGTTCT 14229
| || |||||| || ||| || |||||| | ||| | ||||| | ||| |
Sbjct 4738 GCCACGTCCACGTAGGCC--GAGGCCCTGGGGTTGCCCACCAGGAAGGTGAGGATGTTGT 4795
Query 14230 CGCTCTGGCGGATC--GAGCACCTGAGCTTCTGGTGCTCGAACGTCGACTCCAGCGACGC 14287
||| || ||| ||| | ||||| | ||| ||| || | |||| | | |
Sbjct 4796 CGCACTCGCGAATCTTGTTGACCTGGG--TCTCGTGGCTAAAGGAGGACTGAAAGGCGTC 4853
Query 14288 GGTCTGCGTGGGCGAGCCCACGCAGACCA-GCACGGGTCGCAGCCCGGCCGCGTACTGGG 14346
|||||| || || || ||||||||||| | ||| ||| ||| ||| | || |||| |||
Sbjct 4854 GGTCTGGGTCGGGGATCCCACGCAGACTATGCAGGGGACGCGGCCTCGGCG-GTACAGGG 4912
Query 14347 GCGTGTGGTACAGC---GCGTTGGTCATCCACCAGCAGTACACCACGGCCGTCAGCAGGT 14403
| ||| | |||| |||||| | ||| |||| | |||||||| ||||| | ||
Sbjct 4913 GGGTGCG---CAGCCAGGCGTTGAAGAACCAGTAGCAAAAGACCACGGCGGTCAGAATGT 4969
Query 14404 GGCGACCCAG-GAG-CCCCGCCTCGTCGATCACGa 14436
| ||| || | | ||| |||||||| | |||||
Sbjct 4970 G--GACGGAGAGCGTCCCGGCCTCGTCCACCACGA 5002
Score = 98.7 bits (108), Expect = 1e-15
Identities = 208/307 (68%), Gaps = 24/307 (8%)
Strand=Plus/Plus
Query 33773 CGGCCTCATGGCCCCCGAGCTCTACGTGTACGTGGACCCCGCCTTCACCGCCAACACGCG 33832
||| | | ||||| || ||||||||||||||||| || |||| ||| ||||||
Sbjct 20847 CGGGCGCCTGGCCTCCTCCCTCTACGTGTACGTGGATCCGGCCTATACCAACAACACCTC 20906
Query 33833 CGCCTCGGGGACCGGGATCGCGGCCGTCGGCCGCTACCG--CGA---CGAC----TTCAT 33883
|||||| || ||||| ||||| ||||| || | || | ||| |||| ||||
Sbjct 20907 CGCCTCCGGCACCGGCATCGCCGCCGTGACCCACGACAGGTCGAACCCGACCAGGGTCAT 20966
Query 33884 CGTCTTCGCCCTGGAGCACTTCTTCCTGCGGGCCCTCACGGGCTCGGCCGCCGACGACAT 33943
|||| | | |||||| |||||||||||| || ||| ||||| |||||| | | ||
Sbjct 20967 CGTCCTAGGCCTGGAACACTTCTTCCTGAAGGACCTGACGGGGGACGCCGCCCTCCAGAT 21026
Query 33944 CGCGCGCTGCGCC---GCGCACAGCCTGACGCAGGTC---CTGGCCCTCCACCCGGGGGT 33997
||| |||||| || | || | || ||| ||| || |||| | ||
Sbjct 21027 CGCCACGTGCGCCGTGGCCCTCATCTCCTCGATCGTCACGCTGCACCCCCACTTTGAGGA 21086
Query 33998 GTTCCGCAGCGTCCGCGTGGCGGTGGAGGGCAACAGCAGCCAGGACTCGGCCGTCGCCAT 34057
| || || | || |||||||||||||| ||||||||||| || || |||||
Sbjct 21087 G--GCGAAG-------ATAGCAGTGGAGGGCAACAGTAGCCAGGACTCTGCGGTAGCCAT 21137
Query 34058 CGCCGCC 34064
|||| ||
Sbjct 21138 CGCCTCC 21144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482098078602000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |