Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_006560.1 Length=150715 Score E Sequences producing significant alignments: (Bits) Value seq2750 149 6e-31 >seq2750 Length=44035 Score = 149 bits (164), Expect = 6e-31 Identities = 352/515 (68%), Gaps = 24/515 (5%) Strand=Plus/Plus Query 13934 CTTGAGGTGGGCGTGGAGGCGCGCCATGTAGGCGCTCACCTCCTTGTGCGAGGAGAACAG 13993 |||||| |||||||||| | | | ||| | ||||| ||| ||| ||| || Sbjct 4500 CTTGAGCGTGGCGTGGAGGGTGGTGAGGAAGGTCTTGACCTCGGCGTGGGAGAGGAAGAG 4559 Query 13994 CCGCGTCCA-CCCGGGCAGGTTCGCGGGGTTGGTGATGAA-GCTCTCGGGCACCACGAAG 14051 ||| ||||| ||| | | | |||||||| ||||| || || ||| || |||||| Sbjct 4560 CCGGGTCCAGCCCACGTAC-TGCGCGGGGTCCATGATGGCCGCCCTGGGG-ACGACGAAG 4617 Query 14052 CGGTCGACGAACTGCATGTGCTCCTCGGTGAGGGGGAGCCCGTACTCGAGCGCCTTCATG 14111 ||||||||| | || | |||| | ||| ||| ||||||||||| | ||||||| Sbjct 4618 CGGTCGACGTAGGCCAGGATCTCCGGCGAGAGCTCGAGGCCGTACTCGAGGGTCTTCATG 4677 Query 14112 AGGTTGCCGAACTCGTGCTCGACGCACCGCTTGTTGTTGATGAAGATGGCCCAGCTCCGC 14171 |||| || |||| | ||| ||| ||||||||||||||||||| ||||||| | || Sbjct 4678 AGGTGCCCAAACTGGACGTCGGTGCAGCGCTTGTTGTTGATGAAGAGGGCCCAGTTGCGG 4737 Query 14172 GGCAGCCGCACGTACTCCCGCAGG--GTGCGGTTGCAGATGAGGTACGTGAGCACGTTCT 14229 | || |||||| || ||| || |||||| | ||| | ||||| | ||| | Sbjct 4738 GCCACGTCCACGTAGGCC--GAGGCCCTGGGGTTGCCCACCAGGAAGGTGAGGATGTTGT 4795 Query 14230 CGCTCTGGCGGATC--GAGCACCTGAGCTTCTGGTGCTCGAACGTCGACTCCAGCGACGC 14287 ||| || ||| ||| | ||||| | ||| ||| || | |||| | | | Sbjct 4796 CGCACTCGCGAATCTTGTTGACCTGGG--TCTCGTGGCTAAAGGAGGACTGAAAGGCGTC 4853 Query 14288 GGTCTGCGTGGGCGAGCCCACGCAGACCA-GCACGGGTCGCAGCCCGGCCGCGTACTGGG 14346 |||||| || || || ||||||||||| | ||| ||| ||| ||| | || |||| ||| Sbjct 4854 GGTCTGGGTCGGGGATCCCACGCAGACTATGCAGGGGACGCGGCCTCGGCG-GTACAGGG 4912 Query 14347 GCGTGTGGTACAGC---GCGTTGGTCATCCACCAGCAGTACACCACGGCCGTCAGCAGGT 14403 | ||| | |||| |||||| | ||| |||| | |||||||| ||||| | || Sbjct 4913 GGGTGCG---CAGCCAGGCGTTGAAGAACCAGTAGCAAAAGACCACGGCGGTCAGAATGT 4969 Query 14404 GGCGACCCAG-GAG-CCCCGCCTCGTCGATCACGa 14436 | ||| || | | ||| |||||||| | ||||| Sbjct 4970 G--GACGGAGAGCGTCCCGGCCTCGTCCACCACGA 5002 Score = 98.7 bits (108), Expect = 1e-15 Identities = 208/307 (68%), Gaps = 24/307 (8%) Strand=Plus/Plus Query 33773 CGGCCTCATGGCCCCCGAGCTCTACGTGTACGTGGACCCCGCCTTCACCGCCAACACGCG 33832 ||| | | ||||| || ||||||||||||||||| || |||| ||| |||||| Sbjct 20847 CGGGCGCCTGGCCTCCTCCCTCTACGTGTACGTGGATCCGGCCTATACCAACAACACCTC 20906 Query 33833 CGCCTCGGGGACCGGGATCGCGGCCGTCGGCCGCTACCG--CGA---CGAC----TTCAT 33883 |||||| || ||||| ||||| ||||| || | || | ||| |||| |||| Sbjct 20907 CGCCTCCGGCACCGGCATCGCCGCCGTGACCCACGACAGGTCGAACCCGACCAGGGTCAT 20966 Query 33884 CGTCTTCGCCCTGGAGCACTTCTTCCTGCGGGCCCTCACGGGCTCGGCCGCCGACGACAT 33943 |||| | | |||||| |||||||||||| || ||| ||||| |||||| | | || Sbjct 20967 CGTCCTAGGCCTGGAACACTTCTTCCTGAAGGACCTGACGGGGGACGCCGCCCTCCAGAT 21026 Query 33944 CGCGCGCTGCGCC---GCGCACAGCCTGACGCAGGTC---CTGGCCCTCCACCCGGGGGT 33997 ||| |||||| || | || | || ||| ||| || |||| | || Sbjct 21027 CGCCACGTGCGCCGTGGCCCTCATCTCCTCGATCGTCACGCTGCACCCCCACTTTGAGGA 21086 Query 33998 GTTCCGCAGCGTCCGCGTGGCGGTGGAGGGCAACAGCAGCCAGGACTCGGCCGTCGCCAT 34057 | || || | || |||||||||||||| ||||||||||| || || ||||| Sbjct 21087 G--GCGAAG-------ATAGCAGTGGAGGGCAACAGTAGCCAGGACTCTGCGGTAGCCAT 21137 Query 34058 CGCCGCC 34064 |||| || Sbjct 21138 CGCCTCC 21144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482098078602000