Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq24 212 7e-50
seq2 109 6e-19
seq9 95.1 1e-14
seq1 95.1 1e-14
>seq24
Length=155392059
Score = 212 bits (234), Expect = 7e-50
Identities = 537/813 (66%), Gaps = 22/813 (3%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || ||||||| ||| | ||| ||| |||| | |||||| | ||||
Sbjct 44583427 TTCATTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCC 44583486
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| | || || || || ||||||| | ||| |||
Sbjct 44583487 ATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATA 44583541
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
||| |||| |||||||| | || | || | || || |||||||||| |
Sbjct 44583542 TTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCC-AG 44583600
Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360
|||| ||| ||||| ||||| || || ||||| ||||| |||||||| || ||
Sbjct 44583601 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 44583660
Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420
| || ||||| | || | || | || || |||||| || || | | |||
Sbjct 44583661 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAAT 44583720
Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474
||| | | | | |||| |||| | | ||| | ||||| ||||||||
Sbjct 44583721 TATTTCTCTCACTTTCTCCTCCGATGGTTTGTG----TACCAGG--TGTTTGAACATCAA 44583774
Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534
|| ||||||||||| || ||||| ||||| || || || | |||||| ||||| || |
Sbjct 44583775 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 44583834
Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594
|| ||||| | ||||| || || | ||| ||||| || ||||| | || ||||||||
Sbjct 44583835 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAA 44583894
Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654
||||| || || ||||| || || || | |||||||| || |||| ||||| |||
Sbjct 44583895 GATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCC 44583954
Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714
||||| ||||| | |||| | || | |||| || || ||||| || ||
Sbjct 44583955 AATCCAGCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGT-TCAATGGCATT 44584013
Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774
|| ||| | ||||| | ||| | ||| |||||||||
Sbjct 44584014 GAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACAT 44584073
Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834
|||||||||||| ||||| || || || || || || || ||||| | || |||| |
Sbjct 44584074 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 44584133
Query 21835 TTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893
||||| | | | |||||| | |||| |||||||||||||| |||||||| || |
Sbjct 44584134 CTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTG 44584192
Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATC 21926
|||| || ||| | || |||||||||||
Sbjct 44584193 CAAAGAAAACCAGAACATGGGATATAAAATATC 44584225
>seq2
Length=114371477
Score = 109 bits (120), Expect = 6e-19
Identities = 110/142 (77%), Gaps = 1/142 (1%)
Strand=Plus/Minus
Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559
||||| || || || | ||||||||||||||| | || ||||| | ||||| || ||
Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393
Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619
| ||| ||||| |||||||| | || |||||||||||||| || || |||||||| ||
Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10280333
Query 21620 ACTAATCGTTCACCGTATGTAG 21641
|| | |||||||| ||| |||
Sbjct 10280332 ACAACACGTTCACC-TATTTAG 10280312
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | ||||||| | ||||
Sbjct 10282612 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 10282553
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||||||||||| ||| |||
Sbjct 10282552 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 10282493
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||||| |||||||| || ||
Sbjct 10282492 TTCTCCATAAAGTCAAATGGGTTCTC 10282467
>seq9
Length=144709823
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182
|| |||||||||| ||||| || | ||| || |||||| ||| || ||||| | | |
Sbjct 101019695 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAA 101019754
Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242
||||| || ||||| ||| || || |||||||| |||||||| || || ||
Sbjct 101019755 AACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGT 101019814
Query 21243 ATTCCATAAAATCAAATGGATTTTC 21267
||||||||||||||| ||||||||
Sbjct 101019815 TTTCCATAAAATCAAAAGGATTTTC 101019839
>seq1
Length=229774977
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
||||||||||||||||||| | ||||| || || || || || | || ||||| | ||
Sbjct 140699724 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGC 140699783
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|||| | ||||| || |||||| | ||||||||||||||||||| |||||
Sbjct 140699784 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 140699843
Query 21886 ACTGGCGGCAAAAAATGCCA 21905
||| || ||||| || ||||
Sbjct 140699844 ACTTGCTGCAAAGAAAGCCA 140699863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531832490639760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |