Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq9876 87.8 1e-12 seq13 87.8 1e-12 seq8 82.4 6e-11 >seq2 Length=114371477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 110580048 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 110579989 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | ||| || || || Sbjct 110579988 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATC 110579929 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| || | ||||||| Sbjct 110579928 CTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 110579871 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || ||||| || ||||| || || |||||||||||| Sbjct 110579870 GTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 110579832 >seq9876 Length=376000 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| |||||| || ||||| || || ||||||||||| | Sbjct 278179 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 278120 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | | | | || |||| || ||||| ||| | || ||| ||| ||||| || Sbjct 278119 AGACTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGA 278060 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 ||| ||||| || |||| ||| || | | | |||| | | ||||||| | Sbjct 278059 TTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACT 278000 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||| | || ||||| || ||||| || || |||||||||||| Sbjct 277999 TCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 277949 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || |||||||| || ||| ||||||| | | || | | || Sbjct 278394 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGCTGTAGTCAGAAAGAGTGCGGCCATC 278335 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC-CACAGGCACGCCCTCTTTGT 16841 ||||| | ||||| ||| | || |||| ||| || || | || | ||| |||| | Sbjct 278334 TTCCAACTTCTTGCCTGCAAAGATGAGCCTCTGCTGATCGCGGGGGGATGCCTTCTTCAT 278275 Query 16842 C--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 | || || ||| ||||| | | | ||||| | ||||||| |||| |||||| Sbjct 278274 CCTGGATCTTGGCT--TTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 278217 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||||||||| || || || || |||||||| Sbjct 278216 GGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 278181 >seq13 Length=135337776 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| |||| |||||||| || || ||||||||||| | Sbjct 126789530 CCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 126789589 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || | || ||| ||||| ||| Sbjct 126789590 CAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 126789649 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || || || || ||||| ||| || | | | ||||| | |||||| Sbjct 126789650 GATGCCTTCCTTATCTTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCA 126789707 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || || ||||| || || ||||| ||||||||| Sbjct 126789708 ACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCATT 126789758 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | || ||| ||||| Sbjct 126789317 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT----GCGTC 126789372 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| ||||| || ||| | || | || ||| ||||| ||| | ||| || | Sbjct 126789373 CATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCT 126789432 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || |||||| || || | | | ||||| | |||||| || | ||| Sbjct 126789433 TGTCTTGGATCTTTGCT--TTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGT 126789490 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || || || || || || || || ||||| Sbjct 126789491 GATGGTCTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529 >seq8 Length=162613886 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||| || || |||||| |||| | || | | ||||||| ||| Sbjct 25941854 TGCAGGATGGACTCTTTCTGGATGTTGCAGTCTAAGAGAGTGCGGCCATCCTCCAGCTGT 25941913 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||||||| | || || || || ||||| | || | |||||| ||||| ||||| Sbjct 25941914 TTGCCCGCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTTGAATTTTG 25941973 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | ||||| | |||||| || | ||||||||| || || || Sbjct 25941974 GCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTG 25942033 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| |||||||| Sbjct 25942034 AGGGTCTTCACAAAGATCTGCAT 25942056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405037277159260