Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11 127 1e-24 seq12 122 6e-23 seq9 122 6e-23 seq8 122 6e-23 seq4 122 6e-23 seq8135 118 7e-22 seq1 116 2e-21 seq17 111 1e-19 seq7 102 5e-17 seq18 95.1 8e-15 seq24 93.3 3e-14 seq13 86.0 4e-12 >seq11 Length=134942546 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 95999992 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 95999933 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 95999932 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 95999898 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 104691232 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 104691291 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 104691292 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 104691326 >seq12 Length=134183262 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 79357159 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 79357218 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 79357219 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 79357253 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| | Sbjct 84147992 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATTGGTCTCGTGC 84147933 Query 20009 TAATATTTAGCCTTA 20023 |||||||||||| Sbjct 84147932 CGGTATTTAGCCTTA 84147918 >seq9 Length=144709823 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 67877945 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 67878004 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 67878005 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 67878039 >seq8 Length=162613886 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 76965494 AAGCCCGTTCCCTTGGCTGTGGTTTCGCCGGATAGTAGGTAGGGACAGTGGGAATCTCGT 76965435 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 76965434 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 76965400 >seq4 Length=205426864 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 86799909 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 86799850 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 86799849 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 86799815 >seq8135 Length=1757 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 225 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 284 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 285 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 319 >seq1 Length=229774977 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 |||||||||||||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 218153196 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCG 218153137 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 || |||| |||||| |||||||||||||||||| Sbjct 218153136 TTCATCCATTCATGAACGTCACTAATTAGATGAC 218153103 >seq17 Length=90481686 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 60459963 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 60460022 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || || Sbjct 60460023 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 60460082 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| || | || || || Sbjct 60460083 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 60460142 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 60460143 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178 >seq7 Length=173848474 Score = 102 bits (112), Expect = 5e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 || |||||| | | | |||||| | ||||||||| ||||||||||||| |||| || Sbjct 115442977 ATCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTC 115442918 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 ||||||| || | | || || | ||| ||||| ||||| || || | ||| ||||| | Sbjct 115442917 AGACAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGG 115442858 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | ||||| || ||| || || ||| ||||| | | ||||| ||| Sbjct 115442857 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTC 115442798 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | | || | || || || || || | | |||||||||||| |||||||| || Sbjct 115442797 AGCCTCGAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 115442744 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955 ||||||| ||| ||||||||||||||| || ||| |||| ||||| | |||||| Sbjct 136540000 TAAGCCCATTCTCTTGGCTGTGGTTTCCCTGGATGGTAGGCAGGGGTGGTGGGAATCTCA 136539941 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| |||||| || ||||||||||||||| || Sbjct 136539940 TTCATCCATTCATGTGCATCACTAATTAGATGATGA 136539905 >seq18 Length=83442489 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || | |||||| |||||||| || ||| |||||||||||||| |||| Sbjct 46140274 ACCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGA 46140333 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | | | || || | ||| || || ||||| || | | ||| ||||| | || Sbjct 46140334 CAAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 46140393 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACT--TTCA 38267 | ||||| || ||| || || ||| ||||| | | ||| |||| | |||| Sbjct 46140394 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA--TCCAATGGTTCA 46140451 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | | || | || || ||||| | |||||||||||| |||||||| || Sbjct 46140452 ACCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46140504 >seq24 Length=155392059 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| |||||||||||| ||| | ||||||||| |||| | || || | ||| Sbjct 3658024 ATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTG 3657965 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || || ||||| || || | ||| ||||| | || | || || || ||| || || Sbjct 3657964 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTTATCCTGGATCTT 3657905 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||| | | | |||| |||||| || | || || || || ||| | Sbjct 3657904 GGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCCT 3657845 Query 38294 CAAGGTTTTCACGAATATCTGCATGTTT 38321 | |||||||||||| ||||||| |||| Sbjct 3657844 TAGGGTTTTCACGAAAATCTGCA-GTTT 3657818 >seq13 Length=135337776 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | ||||| || | ||| ||| || || || ||||| |||||| Sbjct 126789531 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789590 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | |||||||||||||| || | | || || || | ||| Sbjct 126789591 AGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789650 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || || ||| ||| ||||||| || || || | ||||| Sbjct 126789651 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 126789710 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA-TGTTTTACAA 38326 || | || || || ||||| |||| || ||||| || ||||||| ||| | |||| Sbjct 126789711 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCATTGTCTAACAA 126789767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334905259795694