Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq11 127 1e-24
seq12 122 6e-23
seq9 122 6e-23
seq8 122 6e-23
seq4 122 6e-23
seq8135 118 7e-22
seq1 116 2e-21
seq17 111 1e-19
seq7 102 5e-17
seq18 95.1 8e-15
seq24 93.3 3e-14
seq13 86.0 4e-12
>seq11
Length=134942546
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 95999992 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 95999933
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 95999932 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 95999898
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 104691232 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 104691291
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 104691292 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 104691326
>seq12
Length=134183262
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 79357159 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 79357218
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 79357219 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 79357253
Score = 95.1 bits (104), Expect = 8e-15
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008
|||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| |
Sbjct 84147992 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATTGGTCTCGTGC 84147933
Query 20009 TAATATTTAGCCTTA 20023
||||||||||||
Sbjct 84147932 CGGTATTTAGCCTTA 84147918
>seq9
Length=144709823
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 67877945 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 67878004
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| |||||||||||||||||||||
Sbjct 67878005 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 67878039
>seq8
Length=162613886
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 76965494 AAGCCCGTTCCCTTGGCTGTGGTTTCGCCGGATAGTAGGTAGGGACAGTGGGAATCTCGT 76965435
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 76965434 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 76965400
>seq4
Length=205426864
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 86799909 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 86799850
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| |||||||||||||||||||||
Sbjct 86799849 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 86799815
>seq8135
Length=1757
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 225 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 284
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| |||||||||||||||||||||
Sbjct 285 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 319
>seq1
Length=229774977
Score = 116 bits (128), Expect = 2e-21
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955
|||||||||||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct 218153196 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCG 218153137
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
|| |||| |||||| ||||||||||||||||||
Sbjct 218153136 TTCATCCATTCATGAACGTCACTAATTAGATGAC 218153103
>seq17
Length=90481686
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | ||
Sbjct 60459963 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 60460022
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | || || || ||||| || || | || ||||| | || | ||||| || ||
Sbjct 60460023 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 60460082
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | ||||| |||||| || | || || ||
Sbjct 60460083 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 60460142
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||| | |||||||||||| |||||||| ||
Sbjct 60460143 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178
>seq7
Length=173848474
Score = 102 bits (112), Expect = 5e-17
Identities = 163/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146
|| |||||| | | | |||||| | ||||||||| ||||||||||||| |||| ||
Sbjct 115442977 ATCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTC 115442918
Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206
||||||| || | | || || | ||| ||||| ||||| || || | ||| ||||| |
Sbjct 115442917 AGACAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGG 115442858
Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266
|| | ||||| || ||| || || ||| ||||| | | ||||| |||
Sbjct 115442857 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTC 115442798
Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
| | || | || || || || || | | |||||||||||| |||||||| ||
Sbjct 115442797 AGCCTCGAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 115442744
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/96 (80%), Gaps = 5/96 (5%)
Strand=Plus/Minus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955
||||||| ||| ||||||||||||||| || ||| |||| ||||| | ||||||
Sbjct 136540000 TAAGCCCATTCTCTTGGCTGTGGTTTCCCTGGATGGTAGGCAGGGGTGGTGGGAATCTCA 136539941
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|| |||| |||||| || ||||||||||||||| ||
Sbjct 136539940 TTCATCCATTCATGTGCATCACTAATTAGATGATGA 136539905
>seq18
Length=83442489
Score = 95.1 bits (104), Expect = 8e-15
Identities = 162/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || | |||||| |||||||| || ||| |||||||||||||| ||||
Sbjct 46140274 ACCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGA 46140333
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| | | | || || | ||| || || ||||| || | | ||| ||||| | ||
Sbjct 46140334 CAAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 46140393
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACT--TTCA 38267
| ||||| || ||| || || ||| ||||| | | ||| |||| | ||||
Sbjct 46140394 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA--TCCAATGGTTCA 46140451
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | | || | || || ||||| | |||||||||||| |||||||| ||
Sbjct 46140452 ACCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46140504
>seq24
Length=155392059
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
||||||||| |||||||||||| ||| | ||||||||| |||| | || || | |||
Sbjct 3658024 ATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTG 3657965
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
|| || ||||| || || | ||| ||||| | || | || || || ||| || ||
Sbjct 3657964 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTTATCCTGGATCTT 3657905
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
||| ||||| | | | |||| |||||| || | || || || || ||| |
Sbjct 3657904 GGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCCT 3657845
Query 38294 CAAGGTTTTCACGAATATCTGCATGTTT 38321
| |||||||||||| ||||||| ||||
Sbjct 3657844 TAGGGTTTTCACGAAAATCTGCA-GTTT 3657818
>seq13
Length=135337776
Score = 86.0 bits (94), Expect = 4e-12
Identities = 162/237 (68%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||| | ||||| || | ||| ||| || || || ||||| ||||||
Sbjct 126789531 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789590
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| | || || | |||||||||||||| || | | || || || | |||
Sbjct 126789591 AGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789650
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| || || || ||| ||| ||||||| || || || | |||||
Sbjct 126789651 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 126789710
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA-TGTTTTACAA 38326
|| | || || || ||||| |||| || ||||| || ||||||| ||| | ||||
Sbjct 126789711 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCATTGTCTAACAA 126789767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334905259795694
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |