Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq24 250 3e-61
seq1 152 6e-32
seq2 98.7 1e-15
>seq24
Length=155392059
Score = 250 bits (276), Expect = 3e-61
Identities = 535/790 (68%), Gaps = 7/790 (1%)
Strand=Plus/Plus
Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|||| ||| || || ||||| || ||||| || ||| | | |||||||| || |
Sbjct 44583602 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 44583661
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
|| ||||| | || ||||| | ||| |||| || || ||| || | | |
Sbjct 44583662 AGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATT 44583721
Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
|||||| | ||| | | | |||||| ||||| | | ||| |||| ||||| |||
Sbjct 44583722 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44583781
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156
|| || |||||||| || |||| || || || | ||||| || || | || ||
Sbjct 44583782 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44583840
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| ||||||||||||||||||||| ||||| || |||||| ||||||||| || || ||
Sbjct 44583841 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 44583900
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
||| || || || || || |||| |||||| || | | || || | |||||
Sbjct 44583901 TTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44583960
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
|| |||||||| || ||||| | |||||| | ||| | || || || || ||
Sbjct 44583961 GCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAG 44584019
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
| || || | | |||| ||||| || || || | ||| ||||||||||||
Sbjct 44584020 AAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44584079
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| ||
Sbjct 44584080 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44584139
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
| ||| ||||| ||| || | ||||||||| ||||| ||||| ||||||||| ||
Sbjct 44584140 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44584199
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575
| ||| | ||| |||||||| | |||| || || | ||||| | | || |
Sbjct 44584200 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGA-A 44584258
Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635
|| || || || || || || ||| ||||| || || || || || || || ||||
Sbjct 44584259 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 44584318
Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695
| | ||| || || || || | | || || |||||||| || |||||| || | |
Sbjct 44584319 TCTGCCAGATATCATGGTACTCGACGGGGAAGATGACAAAGCGGCAAGGGTT-TCCTCTC 44584377
Query 93696 GTAACGGCTC 93705
| | ||||||
Sbjct 44584378 GCAGCGGCTC 44584387
Score = 138 bits (152), Expect = 1e-27
Identities = 375/567 (66%), Gaps = 9/567 (2%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149
||| ||||||| |||||||| || || | || || || | ||||| ||||| |
Sbjct 143818023 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 143817965
Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209
|| || | ||||||| ||||||||||||| ||||| | |||||| ||||||||| |
Sbjct 143817964 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGA 143817905
Query 93210 aTATACCTTCCACGGCTGCAAATGC--CA--CAATACGTTCGGCAAAATTTGCGGAATTA 93265
| | | |||||| ||||| || || ||| |||||| || | || ||
Sbjct 143817904 AGGTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTG 143817845
Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325
| | ||||| || ||||| | || || ||||| | ||| || | ||||| ||
Sbjct 143817844 TTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATG 143817786
Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385
|| | || || | || | || | |||| || |||| || || | ||| |
Sbjct 143817785 GCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAAT--ATGTGTCAATAAGGAGATTA 143817728
Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445
| ||||||||||| | || || || ||||||||||| || ||||| || | |||
Sbjct 143817727 TTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCT 143817668
Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505
|| ||| | ||||||||| |||| || || | ||||||| | ||| ||||| ||
Sbjct 143817667 GTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 143817608
Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565
|||||||| ||||||| ||||| |||||||| | | | ||| || || |||
Sbjct 143817607 GCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCC 143817548
Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625
|| | | | || || || || || || || | | | |||| || || | ||| ||
Sbjct 143817547 CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACT 143817488
Query 93626 TTTTTGTACATATCCCATATGTCTTGA 93652
|| || ||||| | ||| || || |||
Sbjct 143817487 TTCTTTTACATTTTCCAAATATCATGA 143817461
>seq1
Length=229774977
Score = 152 bits (168), Expect = 6e-32
Identities = 236/336 (70%), Gaps = 6/336 (2%)
Strand=Plus/Plus
Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263
||||||| ||| ||||||| || ||||| || |||| || ||| || | | || |
Sbjct 140699552 AAAAAAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 140699611
Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323
| | || || | || ||||||| || || ||| | ||||||| ||||| |
Sbjct 140699612 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTT---CTTGACACAAGGT---GTTTCAA 140699665
Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383
| | ||| || || | || | || | |||||| |||||| || || || | |||
Sbjct 140699666 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140699725
Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443
||||||||||||||| || ||||| ||||||||||| | |||||||| | ||||
Sbjct 140699726 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140699785
Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503
| || ||||| |||||||| ||||| ||| || | |||||||| ||||| |||||
Sbjct 140699786 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 140699845
Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539
||||||||| ||||||| | | | ||||||||
Sbjct 140699846 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140699881
>seq2
Length=114371477
Score = 98.7 bits (108), Expect = 1e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202
||||| | || || | ||||||||||||||||||||| ||||| || |||||| |||
Sbjct 10280425 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCG 10280366
Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||||| || || |||||||| || ||||| || |||| ||||||
Sbjct 10280365 GAAAAGAAAATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 10280322
Score = 96.9 bits (106), Expect = 4e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414
|||| |||||| || || || | ||| ||||||||||||||| | || ||||| ||
Sbjct 10278080 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10278021
Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474
||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| |||
Sbjct 10278020 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10277961
Query 93475 TAC 93477
||
Sbjct 10277960 CAC 10277958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556789285151760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |