Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq24 250 3e-61 seq1 152 6e-32 seq2 98.7 1e-15 >seq24 Length=155392059 Score = 250 bits (276), Expect = 3e-61 Identities = 535/790 (68%), Gaps = 7/790 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || ||||| || ||||| || ||| | | |||||||| || | Sbjct 44583602 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 44583661 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || ||||| | ||| |||| || || ||| || | | | Sbjct 44583662 AGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATT 44583721 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| | ||| | | | |||||| ||||| | | ||| |||| ||||| ||| Sbjct 44583722 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44583781 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | ||||| || || | || || Sbjct 44583782 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44583840 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 44583841 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 44583900 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| || || || || || |||| |||||| || | | || || | ||||| Sbjct 44583901 TTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44583960 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || ||||| | |||||| | ||| | || || || || || Sbjct 44583961 GCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAG 44584019 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || || | | |||| ||||| || || || | ||| |||||||||||| Sbjct 44584020 AAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44584079 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| || Sbjct 44584080 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44584139 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 | ||| ||||| ||| || | ||||||||| ||||| ||||| ||||||||| || Sbjct 44584140 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44584199 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575 | ||| | ||| |||||||| | |||| || || | ||||| | | || | Sbjct 44584200 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGA-A 44584258 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 || || || || || || || ||| ||||| || || || || || || || |||| Sbjct 44584259 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 44584318 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | | ||| || || || || | | || || |||||||| || |||||| || | | Sbjct 44584319 TCTGCCAGATATCATGGTACTCGACGGGGAAGATGACAAAGCGGCAAGGGTT-TCCTCTC 44584377 Query 93696 GTAACGGCTC 93705 | | |||||| Sbjct 44584378 GCAGCGGCTC 44584387 Score = 138 bits (152), Expect = 1e-27 Identities = 375/567 (66%), Gaps = 9/567 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 143818023 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 143817965 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||| ||||||||||||| ||||| | |||||| ||||||||| | Sbjct 143817964 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGA 143817905 Query 93210 aTATACCTTCCACGGCTGCAAATGC--CA--CAATACGTTCGGCAAAATTTGCGGAATTA 93265 | | | |||||| ||||| || || ||| |||||| || | || || Sbjct 143817904 AGGTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTG 143817845 Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | | ||||| || ||||| | || || ||||| | ||| || | ||||| || Sbjct 143817844 TTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATG 143817786 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || | || || | || | || | |||| || |||| || || | ||| | Sbjct 143817785 GCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAAT--ATGTGTCAATAAGGAGATTA 143817728 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 | ||||||||||| | || || || ||||||||||| || ||||| || | ||| Sbjct 143817727 TTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCT 143817668 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || ||| | ||||||||| |||| || || | ||||||| | ||| ||||| || Sbjct 143817667 GTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 143817608 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565 |||||||| ||||||| ||||| |||||||| | | | ||| || || ||| Sbjct 143817607 GCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCC 143817548 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || | | | || || || || || || || | | | |||| || || | ||| || Sbjct 143817547 CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACT 143817488 Query 93626 TTTTTGTACATATCCCATATGTCTTGA 93652 || || ||||| | ||| || || ||| Sbjct 143817487 TTCTTTTACATTTTCCAAATATCATGA 143817461 >seq1 Length=229774977 Score = 152 bits (168), Expect = 6e-32 Identities = 236/336 (70%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 ||||||| ||| ||||||| || ||||| || |||| || ||| || | | || | Sbjct 140699552 AAAAAAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 140699611 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | || || | || ||||||| || || ||| | ||||||| ||||| | Sbjct 140699612 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTT---CTTGACACAAGGT---GTTTCAA 140699665 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 | | ||| || || | || | || | |||||| |||||| || || || | ||| Sbjct 140699666 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140699725 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 ||||||||||||||| || ||||| ||||||||||| | |||||||| | |||| Sbjct 140699726 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140699785 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | || ||||| |||||||| ||||| ||| || | |||||||| ||||| ||||| Sbjct 140699786 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 140699845 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539 ||||||||| ||||||| | | | |||||||| Sbjct 140699846 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140699881 >seq2 Length=114371477 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| ||||| || |||||| ||| Sbjct 10280425 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCG 10280366 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || |||||||| || ||||| || |||| |||||| Sbjct 10280365 GAAAAGAAAATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 10280322 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 10278080 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10278021 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 10278020 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10277961 Query 93475 TAC 93477 || Sbjct 10277960 CAC 10277958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556789285151760