Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8 127 2e-24 seq10 122 7e-23 seq15 118 9e-22 seq13 109 5e-19 seq9 109 5e-19 seq4 109 5e-19 seq17 91.5 1e-13 seq24 82.4 6e-11 >seq8 Length=162613886 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 25942058 AGATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCCA 25941999 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || |||| |||||||||||||||||||| ||||||| || | Sbjct 25941998 GTGACACCACTGAGAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACTTGACC 25941939 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | |||||||| |||||||| ||||||||| | |||||| |||||| ||| || | || Sbjct 25941938 AGCAACGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTTAGACTGCA 25941879 Query 22397 ACATTCAAAAAGAATCCA 22414 |||| || ||||| |||| Sbjct 25941878 ACATCCAGAAAGAGTCCA 25941861 >seq10 Length=138149186 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 22464927 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCA 22464986 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||| ||||||||||||||||||||||| || || || Sbjct 22464987 GTGACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACA 22465046 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| ||||||||| |||||||| | |||||| |||||| |||| || |||| Sbjct 22465047 AGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACA 22465106 Query 22397 ACATTCAAAAAGAATCCACC 22416 || | || ||| | ||||| Sbjct 22465107 ACGTCCAGAAACAGCCCACC 22465126 >seq15 Length=107357366 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| || | ||| Sbjct 57005111 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCAAGCCCA 57005170 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | | || ||||| |||||||| |||||||||||||| ||||| || | Sbjct 57005171 CCGACACCATTTAGAATGTCAAAACCAAAATTCAGGACAAGGAGGGTATCCCACCTGACC 57005230 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| |||||| | | |||| | | |||||| || ||| |||| | |||| Sbjct 57005231 AGCAGCATCTGATATTTTCTAGGAAACGGCTGGAGGATGGCCACACTCTCTCAGGCTACA 57005290 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 57005291 ACATCCAGAAAGAGTCCACC 57005310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || | ||| || || | || || ||||| |||| ||||| || | | | Sbjct 20294569 AGATGCAGATCTCTGTAAAGACCCTCACAGGCAAAACCATCACCCTTGAGGTCCAGCCAA 20294628 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| || || || ||||||||||| || ||||| || | Sbjct 20294629 GTGACACCAGTGAAAATGTCAAAGCCAAGATCCACGACAAGGAGGGCATCCCACCTGACC 20294688 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| ||||||| ||||||||| |||||| ||| || | || || || | Sbjct 20294689 AGCAGCATCTGATATTTGTGAACAAACAGTTGGAGGATGGCCGTACTCTTTCAGACTATA 20294748 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 20294749 ACATCCAGAAAGAGTCCACC 20294768 >seq13 Length=135337776 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||| | || || | || || || || |||| ||||| ||||| || Sbjct 116540811 AGATGCAGATCTTTATGAACACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGCCCG 116540752 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| || | || || | Sbjct 116540751 GTGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCTGCCTGACC 116540692 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| ||||||| ||||||||| | |||||| || || |||| || || | Sbjct 116540691 AGCAGTGTCTGATATTTGTGGGCAAACAGCTGGAGGATGGCCACAGTCTCTCAGACTAGA 116540632 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 116540631 ACATCCAGAAAGAGTCCACC 116540612 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || || | || || || || |||| ||||| || || ||| Sbjct 126789530 GATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 126789471 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | ||||| ||| || ||||||||||| || || || || || || Sbjct 126789470 TGACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 126789411 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 126789410 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 126789351 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || ||||| ||||| | || || || |||| ||| | || ||| Sbjct 126789350 CATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 126789302 >seq9 Length=144709823 Score = 109 bits (120), Expect = 5e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| ||||||||||| || ||||| || || || ||||| ||| |||| |||||| Sbjct 122689370 AAAATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATACTTGCGGGCAAA 122689429 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| |||||| |||| || |||||||| || ||||| ||||| Sbjct 122689430 CAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCAC 122689482 >seq4 Length=205426864 Score = 109 bits (120), Expect = 5e-19 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||| ||| || ||||| || || | || || || || |||||||||| || | | | Sbjct 27700144 AGACGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACTCTTGACGTCAAGCCAA 27700203 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || | ||| ||||||||||||||||| ||||| ||||| || | Sbjct 27700204 GTGACACCATTGAGAATGTGAAAGCCAAAATTCAAGACAAGGA-GGTATCCCACCTGACC 27700262 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| ||| |||| ||||||||| | |||||| ||| || |||| || | || Sbjct 27700263 AGCAGCATCTGATACTTGCTGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTGCA 27700322 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| | ||||| |||||| Sbjct 27700323 ACATCCGGAAAGAGTCCACC 27700342 >seq17 Length=90481686 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| || ||||| || || | || || | || |||| ||||| || || ||| Sbjct 47492015 AGATGTGGATCTTTGTGAAGACCCTCACAGGCCAGACCATCACCCTTGAGGTCGAGCCCA 47491956 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||| || || || ||||| ||||||||||||| | |||| || ||| || | Sbjct 47491955 GTGATGCCACTGAGAATGTCAAAGCCAAAATTCAAGACAGGTAGGGCATCTTACCTGACC 47491896 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| ||||||| ||||||||| | ||||| || ||| ||| || |||| Sbjct 47491895 AGCAGTGTCTGATATTTGAGGGCAAACAGCTGAAGGATGGCCACACACTCTTAGACTACA 47491836 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 47491835 ACATCCAGAAAGAGTCCACC 47491816 >seq24 Length=155392059 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| ||||| || ||||| ||| || || || |||| ||||| || ||| || | | Sbjct 3657822 TGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACCATCACCCTTGAGGTTGAACCCTCAG 3657881 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 || | | || || | || || || || || |||||||| ||||| || ||||| | Sbjct 3657882 ATGCGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCTGATCAGC 3657941 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 || | || || ||||| ||||| || | || ||| || || | || || | ||||| Sbjct 3657942 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGCAACA 3658001 Query 22400 TTCAAAAAGA 22409 ||||||| || Sbjct 3658002 TTCAAAAGGA 3658011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419675444020810