Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 seq17 91.5 3e-13 seq7 91.5 3e-13 seq3144 89.7 1e-12 seq6 89.7 1e-12 >seq1 Length=229774977 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 138290111 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 138290052 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 138290051 TCCCGGCAGAGA 138290040 >seq17 Length=90481686 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 3301953 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3301894 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 3301893 CCCCACGTTGGGC 3301881 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3277701 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3277642 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3277641 CCCACGTTGGGC 3277630 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3295606 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3295665 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3295666 CCCACGTTGGGC 3295677 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| || Sbjct 3312855 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCAAG 3312914 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 3312915 CCCCACGTTGGGC 3312927 >seq7 Length=173848474 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 27045899 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 27045958 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 27045959 CCCCACGTTGGGC 27045971 >seq3144 Length=1046 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 85 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 144 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 145 CCCACGTTGGGC 156 >seq6 Length=183735486 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 183685520 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 183685579 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 183685580 CCCACGTTGGGC 183685591 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 183698621 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 183698562 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 183698561 CCCACGTTGGGC 183698550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027701500060434