Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq17 132 1e-25 seq7 120 7e-22 seq13 118 3e-21 seq2 118 3e-21 seq18 111 4e-19 seq3 111 4e-19 seq1 111 4e-19 seq9876 107 5e-18 seq8 107 5e-18 seq24 104 6e-17 seq14 98.7 2e-15 seq10 84.2 5e-11 >seq17 Length=90481686 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 60459949 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 60460008 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | || || || || |||||||| | ||| ||| | || Sbjct 60460009 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 60460068 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 60460069 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 60460128 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| || || || || ||||| ||||||||| || Sbjct 60460129 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 60460179 >seq7 Length=173848474 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||| | ||||| | Sbjct 115442973 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGAC 115442914 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | ||| ||||| || |||||||| | || ||| | || Sbjct 115442913 AAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 115442854 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| | Sbjct 115442853 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGCC 115442794 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||| | | || || || ||||| ||||||||| || Sbjct 115442793 TCGAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTTG 115442743 >seq13 Length=135337776 Score = 118 bits (130), Expect = 3e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||||| ||||| || ||||| | Sbjct 126789531 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789590 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | |||||||| || ||||||| | ||| || | ||| Sbjct 126789591 AGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789650 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| ||||| || || || || || || || | || || | || || Sbjct 126789651 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 126789710 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||| || ||||||||||| || || ||||||||| Sbjct 126789711 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCATT 126789758 >seq2 Length=114371477 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 110580026 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 110579967 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || ||||| ||||| ||||||||||| || || ||||| ||| Sbjct 110579966 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTT 110579907 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| ||||| || || || ||| Sbjct 110579906 TCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACG 110579847 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 110579846 AAGATCTGCATTTTG 110579832 >seq18 Length=83442489 Score = 111 bits (122), Expect = 4e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || | ||||| || |||||||| ||||| ||| | | Sbjct 46140275 CCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGAC 46140334 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||| ||||| | ||| || || || |||||| | | || ||| | || Sbjct 46140335 AAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 46140394 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 46140395 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCAACC 46140454 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | ||| ||| | |||||||| || || || || ||||| ||||||||| || Sbjct 46140455 TTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 46140505 >seq3 Length=247869975 Score = 111 bits (122), Expect = 4e-19 Identities = 144/201 (72%), Gaps = 10/201 (5%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 140398437 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 140398496 Query 288343 ATCAGACGCTGTTGA----------GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGC 288392 || || | ||| || | | ||| | ||||||||||||||||| || || Sbjct 140398497 ATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGCCTTCTTTATCCTGGATCTTGGC 140398556 Query 288393 TTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| ||||| || | || || | || ||||| || ||||| ||||| || ||||| Sbjct 140398557 CTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAG 140398616 Query 288453 AGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 140398617 GGTCTTCACGAAGATCTGCAT 140398637 Score = 102 bits (112), Expect = 2e-16 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| |||||||| | | ||||| | ||||| | || || |||| ||| Sbjct 140398675 TCTTTCTGGATGTTATAGTCAGAATGAGTGCGGTCATCTTCCACCTGCTTGACTGCAAAG 140398734 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || ||| || ||||| ||||||||||| || || ||||| Sbjct 140398735 ATGAGCCTCTGCTGG---TCCGGGGTAATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 140398791 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || ||||| || | || ||||| | ||| || ||||| Sbjct 140398792 TTTTCGATGGTGTCCCTGGGCTCCACTTCAAGGGCAATGGTCTTGCTGGTAAGGGTCTTC 140398851 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 140398852 ACGAAGATCTGCATTTTG 140398869 >seq1 Length=229774977 Score = 111 bits (122), Expect = 4e-19 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || || | || ||||||| || | ||||| ||| Sbjct 198269208 TCTTTCTGGATGTTGTAGTCAGAAAGAGTACAGCCATCTTCTAGCTGCATGCCTGCAAAG 198269267 Query 288343 ATCAGACGCTGTTGAGAATCTGGGA---TTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || |||| | ||||| ||||||||||| || || ||||| Sbjct 198269268 ATGAGCCTCTGCTGG---TCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTCACA 198269324 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| || ||||| ||||| Sbjct 198269325 TTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 198269384 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 198269385 ACGAAGATCTGCATTTTG 198269402 >seq9876 Length=376000 Score = 107 bits (118), Expect = 5e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||| || ||||| | || || ||||| ||| Sbjct 278143 TCTTTCTGGATGTTGTAGTCAGAAAGACTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAG 278084 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATT-CCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || ||| || || |||||| ||||||||||| |||||||| || || || || Sbjct 278083 ATGAGCTTCTGCTGGTCATG-GGGATTGCCTTCTTTATCTTGGATTTTGGCCTTGACATT 278025 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| | || | || ||||| || ||||| |||| ||||| || || || || Sbjct 278024 TTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCAC 277965 Query 288462 GAATATCTGCATTATG 288477 ||| ||||||||| || Sbjct 277964 GAAGATCTGCATTTTG 277949 >seq8 Length=162613886 Score = 107 bits (118), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| || || ||||| | Sbjct 160503471 CCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTTGTAGTCAGAC 160503412 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | | ||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 160503411 AG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 160503354 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| ||| | ||| || Sbjct 160503353 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAACC 160503294 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | ||| ||||| |||||||| || || || || | | | ||||||||| || Sbjct 160503293 TTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTTATGGAAATCTGCATTTTG 160503243 >seq24 Length=155392059 Score = 104 bits (114), Expect = 6e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| | ||||| || | ||||||| || || ||||| || || |||| | | Sbjct 3658046 CACCACAAAGTCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACA 3657987 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGA 288367 || ||||| ||||| | ||| || || || |||||||| | || ||| | || | Sbjct 3657986 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAA 3657927 Query 288368 TTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTT 288427 |||| || ||||||||||| || || || || |||||||| | ||| | ||| || | Sbjct 3657926 TTCCCTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCT 3657867 Query 288428 CGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 | || ||||| |||||||| | || || || ||||| ||||||| Sbjct 3657866 CAAGGGTGATGGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCA 3657822 >seq14 Length=114479721 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/189 (72%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| |||||||| | || ||| | | ||||| | || || |||||||||| Sbjct 87528486 CTTTCTGGATTTTATAGTCAGAAAGAGTGTGGACATCTTCCAGCTGCTTGCCTGCGAAGA 87528427 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | || | ||| || | | ||||| |||||||||||||||| || | ||||| |||| Sbjct 87528426 TGAGCCTCTGCTG-GTCTGGGGGATGTCTTCTTTATCCTGGATCTT-GGTTTCATATTTT 87528369 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || || || ||||| || || |||| ||||| || || || ||||| |||| Sbjct 87528368 CAATGCTGTCACT---GTCTACCTCCAGGGTGACGGTCTTGCCAGTGAGGGTCTTCACGA 87528312 Query 288464 ATATCTGCA 288472 | ||||||| Sbjct 87528311 AGATCTGCA 87528303 >seq10 Length=138149186 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 288285 TTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT 288344 ||| |||| || ||||| | ||| ||||| || || || | ||||| | || || || Sbjct 22465117 TTTCTGGACGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCTGGCAAATAT 22465058 Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 ||||||||| | | ||||| || || || || || |||||||| | || || || Sbjct 22465057 CAGACGCTGCTTGTCAGGGGGGATACCCTCCTTGTCTTGAATTTTCGCACTGACATTCTC 22464998 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || | || || || || ||||| ||||| || || || ||||| || || Sbjct 22464997 AATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAA 22464938 Query 288465 TATCTGCAT 288473 |||||||| Sbjct 22464937 GATCTGCAT 22464929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179499115455772