Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq17 132 1e-25
seq7 120 7e-22
seq13 118 3e-21
seq2 118 3e-21
seq18 111 4e-19
seq3 111 4e-19
seq1 111 4e-19
seq9876 107 5e-18
seq8 107 5e-18
seq24 104 6e-17
seq14 98.7 2e-15
seq10 84.2 5e-11
>seq17
Length=90481686
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | || ||||||| || || ||||| ||||| ||||| |
Sbjct 60459949 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 60460008
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||| | || || || || |||||||| | ||| ||| | ||
Sbjct 60460009 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 60460068
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||||| | ||| | ||| ||
Sbjct 60460069 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 60460128
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||| || || || || ||||| ||||||||| ||
Sbjct 60460129 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 60460179
>seq7
Length=173848474
Score = 120 bits (132), Expect = 7e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| || || ||||| ||| | ||||| |
Sbjct 115442973 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGAC 115442914
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || | ||| ||||| | ||| ||||| || |||||||| | || ||| | ||
Sbjct 115442913 AAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 115442854
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||||| | ||| | ||| |
Sbjct 115442853 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGCC 115442794
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||| | | || || || ||||| ||||||||| ||
Sbjct 115442793 TCGAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTTG 115442743
>seq13
Length=135337776
Score = 118 bits (130), Expect = 3e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||| | || || || || | ||| ||||| ||||| || ||||| |
Sbjct 126789531 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789590
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || ||||| | |||||||| || ||||||| | ||| || | |||
Sbjct 126789591 AGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789650
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| ||||| ||||| || || || || || || || | || || | || ||
Sbjct 126789651 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 126789710
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||| || ||||||||||| || || |||||||||
Sbjct 126789711 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCATT 126789758
>seq2
Length=114371477
Score = 118 bits (130), Expect = 3e-21
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| |||
Sbjct 110580026 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 110579967
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || ||||| ||||| ||||||||||| || || ||||| |||
Sbjct 110579966 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTT 110579907
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || || ||||| ||||| ||||| || || || |||
Sbjct 110579906 TCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACG 110579847
Query 288463 AATATCTGCATTATG 288477
|| ||||||||| ||
Sbjct 110579846 AAGATCTGCATTTTG 110579832
>seq18
Length=83442489
Score = 111 bits (122), Expect = 4e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || | ||||| || |||||||| ||||| ||| | |
Sbjct 46140275 CCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGAC 46140334
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||| ||||| | ||| || || || |||||| | | || ||| | ||
Sbjct 46140335 AAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 46140394
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||||| | ||| | ||| ||
Sbjct 46140395 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCAACC 46140454
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
| ||| ||| | |||||||| || || || || ||||| ||||||||| ||
Sbjct 46140455 TTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 46140505
>seq3
Length=247869975
Score = 111 bits (122), Expect = 4e-19
Identities = 144/201 (72%), Gaps = 10/201 (5%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| |||
Sbjct 140398437 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 140398496
Query 288343 ATCAGACGCTGTTGA----------GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGC 288392
|| || | ||| || | | ||| | ||||||||||||||||| || ||
Sbjct 140398497 ATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGCCTTCTTTATCCTGGATCTTGGC 140398556
Query 288393 TTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452
||||| ||||| || | || || | || ||||| || ||||| ||||| || |||||
Sbjct 140398557 CTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAG 140398616
Query 288453 AGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||||||
Sbjct 140398617 GGTCTTCACGAAGATCTGCAT 140398637
Score = 102 bits (112), Expect = 2e-16
Identities = 142/198 (72%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| |||||||| | | ||||| | ||||| | || || |||| |||
Sbjct 140398675 TCTTTCTGGATGTTATAGTCAGAATGAGTGCGGTCATCTTCCACCTGCTTGACTGCAAAG 140398734
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| || | ||| || || ||| || ||||| ||||||||||| || || |||||
Sbjct 140398735 ATGAGCCTCTGCTGG---TCCGGGGTAATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 140398791
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| || | || || | || ||||| || | || ||||| | ||| || |||||
Sbjct 140398792 TTTTCGATGGTGTCCCTGGGCTCCACTTCAAGGGCAATGGTCTTGCTGGTAAGGGTCTTC 140398851
Query 288460 ACGAATATCTGCATTATG 288477
||||| ||||||||| ||
Sbjct 140398852 ACGAAGATCTGCATTTTG 140398869
>seq1
Length=229774977
Score = 111 bits (122), Expect = 4e-19
Identities = 144/198 (73%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || || | || ||||||| || | ||||| |||
Sbjct 198269208 TCTTTCTGGATGTTGTAGTCAGAAAGAGTACAGCCATCTTCTAGCTGCATGCCTGCAAAG 198269267
Query 288343 ATCAGACGCTGTTGAGAATCTGGGA---TTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| || | ||| || || |||| | ||||| ||||||||||| || || |||||
Sbjct 198269268 ATGAGCCTCTGCTGG---TCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTCACA 198269324
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| || | || || | || || || || ||||| ||||| || ||||| |||||
Sbjct 198269325 TTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 198269384
Query 288460 ACGAATATCTGCATTATG 288477
||||| ||||||||| ||
Sbjct 198269385 ACGAAGATCTGCATTTTG 198269402
>seq9876
Length=376000
Score = 107 bits (118), Expect = 5e-18
Identities = 143/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || ||| || ||||| | || || ||||| |||
Sbjct 278143 TCTTTCTGGATGTTGTAGTCAGAAAGACTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAG 278084
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATT-CCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| || ||| || || |||||| ||||||||||| |||||||| || || || ||
Sbjct 278083 ATGAGCTTCTGCTGGTCATG-GGGATTGCCTTCTTTATCTTGGATTTTGGCCTTGACATT 278025
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| |||| | || | || ||||| || ||||| |||| ||||| || || || ||
Sbjct 278024 TTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCAC 277965
Query 288462 GAATATCTGCATTATG 288477
||| ||||||||| ||
Sbjct 277964 GAAGATCTGCATTTTG 277949
>seq8
Length=162613886
Score = 107 bits (118), Expect = 5e-18
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| || || ||||| || || ||||| |
Sbjct 160503471 CCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTTGTAGTCAGAC 160503412
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| | | ||| ||||| | ||| || || || |||||||| | || ||| | ||
Sbjct 160503411 AG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 160503354
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||||| ||| | ||| ||
Sbjct 160503353 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAACC 160503294
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
| ||| ||||| |||||||| || || || || | | | ||||||||| ||
Sbjct 160503293 TTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTTATGGAAATCTGCATTTTG 160503243
>seq24
Length=155392059
Score = 104 bits (114), Expect = 6e-17
Identities = 158/225 (70%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307
|||| | ||||| || | ||||||| || || ||||| || || |||| | |
Sbjct 3658046 CACCACAAAGTCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACA 3657987
Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGA 288367
|| ||||| ||||| | ||| || || || |||||||| | || ||| | || |
Sbjct 3657986 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAA 3657927
Query 288368 TTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTT 288427
|||| || ||||||||||| || || || || |||||||| | ||| | ||| || |
Sbjct 3657926 TTCCCTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCT 3657867
Query 288428 CGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472
| || ||||| |||||||| | || || || ||||| |||||||
Sbjct 3657866 CAAGGGTGATGGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCA 3657822
>seq14
Length=114479721
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/189 (72%), Gaps = 5/189 (3%)
Strand=Plus/Minus
Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343
|||| ||||| |||||||| | || ||| | | ||||| | || || ||||||||||
Sbjct 87528486 CTTTCTGGATTTTATAGTCAGAAAGAGTGTGGACATCTTCCAGCTGCTTGCCTGCGAAGA 87528427
Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403
| || | ||| || | | ||||| |||||||||||||||| || | ||||| ||||
Sbjct 87528426 TGAGCCTCTGCTG-GTCTGGGGGATGTCTTCTTTATCCTGGATCTT-GGTTTCATATTTT 87528369
Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
| || || || ||||| || || |||| ||||| || || || ||||| ||||
Sbjct 87528368 CAATGCTGTCACT---GTCTACCTCCAGGGTGACGGTCTTGCCAGTGAGGGTCTTCACGA 87528312
Query 288464 ATATCTGCA 288472
| |||||||
Sbjct 87528311 AGATCTGCA 87528303
>seq10
Length=138149186
Score = 84.2 bits (92), Expect = 5e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 288285 TTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT 288344
||| |||| || ||||| | ||| ||||| || || || | ||||| | || || ||
Sbjct 22465117 TTTCTGGACGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCTGGCAAATAT 22465058
Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404
||||||||| | | ||||| || || || || || |||||||| | || || ||
Sbjct 22465057 CAGACGCTGCTTGTCAGGGGGGATACCCTCCTTGTCTTGAATTTTCGCACTGACATTCTC 22464998
Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | || || | || || || || ||||| ||||| || || || ||||| || ||
Sbjct 22464997 AATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAA 22464938
Query 288465 TATCTGCAT 288473
||||||||
Sbjct 22464937 GATCTGCAT 22464929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179499115455772
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