Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq13 109 6e-19 seq17 93.3 5e-14 seq2 93.3 5e-14 seq18 91.5 2e-13 seq7 91.5 2e-13 seq10042 89.7 6e-13 seq9897 89.7 6e-13 seq1 87.8 2e-12 >seq13 Length=135337776 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || |||| ||||| |||| ||| ||| || || || ||||| |||| Sbjct 126789302 ACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 126789361 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || ||||| || ||||| || || | | ||||||||| | || Sbjct 126789362 CAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 126789421 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| ||| ||| ||||| || | | ||||| || | || || Sbjct 126789422 GATGCCTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGAC 126789481 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 126789482 CTCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 126803629 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 126803688 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 126803689 ATACTAACGAGGA 126803701 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 97012855 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97012796 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 97012795 TACTAACGAGGA 97012784 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 126815741 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 126815800 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 126815801 TACTAACGAGGA 126815812 >seq17 Length=90481686 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||| | ||| | || |||||||||||||||||| |||| || ||| || | || Sbjct 60459963 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 60460022 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 60460023 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 60460082 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || || | | | | ||| || | ||| || |||| |||||||| Sbjct 60460083 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 60460142 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || ||||| || || || || || || |||||||| Sbjct 60460143 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178 >seq2 Length=114371477 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| |||| || ||| || || || ||||| |||| ||||| || | Sbjct 110580050 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 110579991 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || ||||| | ||||||||||| || | || ||||| Sbjct 110579990 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 110579931 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | | | | ||||| || | ||||| || | |||||| Sbjct 110579930 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 110579871 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || ||||| || || || || || ||||| |||||||| || Sbjct 110579870 GTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTGAC 110579830 >seq18 Length=83442489 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 48168124 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 48168065 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 48168064 ATACTAACGAGGA 48168052 >seq7 Length=173848474 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27989442 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27989383 Query 57067 TACTACCGAGG-ATTGA 57082 ||||| ||||| ||||| Sbjct 27989382 TACTAACGAGGAATTGA 27989366 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 28091027 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 28091086 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 28091087 ATACTAACGAGGA 28091099 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| || |||||||||||||||||| |||||||||||||||||| |||||| Sbjct 28010722 AATCGAACCCCGGCCTCCCGCGTGACAGGCGGGTATACTCACCACTATACTAACGAGGA 28010664 >seq10042 Length=1204 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1097 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1038 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1037 TACTAACGAGGA 1026 >seq9897 Length=675 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 283 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 224 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 223 TACTAACGAGGA 212 >seq1 Length=229774977 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| |||| ||||| | | || ||||||||| | || || || Sbjct 198269207 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTACAGCCATCTTCTAGCTGCATGCCTGCAAA 198269266 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||||| | | || ||||| ||| ||| || || | | Sbjct 198269267 GATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTCACATT 198269326 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 198269327 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 198269386 Query 42197 AAAGATTTGCATTTTCAC 42214 ||||| |||||||| || Sbjct 198269387 GAAGATCTGCATTTTGAC 198269404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543143037896160