Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 136 4e-27 seq9876 122 9e-23 seq17 120 3e-22 seq1 109 5e-19 seq3 107 2e-18 seq8 95.1 1e-14 seq24 89.7 5e-13 seq7 87.8 2e-12 seq18 84.2 2e-11 >seq2 Length=114371477 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 110580032 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 110579973 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||||||||| || ||||| || || || || || ||| Sbjct 110579972 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 110579913 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||| | ||| Sbjct 110579912 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTT 110579853 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 110579852 TTCACGAAGATCTGCATTTT 110579833 >seq9876 Length=376000 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| ||||| || |||||||| || | | ||| | ||| Sbjct 278164 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCAGCCATCT 278105 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | |||||| ||||||||| | ||| | |||||||| ||| Sbjct 278104 TCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGATTGCCTTCTTTATCT 278045 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | || ||| || |||||||| | || | | || Sbjct 278044 TGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGATC 277985 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| | ||||| ||||| || |||||||| Sbjct 277984 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 277950 >seq17 Length=90481686 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || |||||||| ||||| || | | || || | Sbjct 60459960 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 60460019 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| ||||||||||| ||| | || || | |||||| || |||||||||||||| || Sbjct 60460020 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 60460079 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | ||||| || || || || | || | Sbjct 60460080 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 60460139 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || | ||||| |||||||| |||||||| Sbjct 60460140 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178 >seq1 Length=229774977 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | || | | ||||| |||||| |||| Sbjct 198269202 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACAGCCATCTTCTAGCTGCATGCCT 198269261 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| | || ||||| || || || || || ||| Sbjct 198269262 GCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTC 198269321 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | ||||||||| |||| || Sbjct 198269322 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 198269381 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 198269382 TTCACGAAGATCTGCATTTT 198269401 >seq3 Length=247869975 Score = 107 bits (118), Expect = 2e-18 Identities = 147/207 (71%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 140398431 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 140398490 Query 64307 GCATAAATGAGCCGCTGCTGGTCGG----------GAGGAATTCCTTCTTTTTCTTGTAT 64356 ||| | ||||||| ||||||||||| | || | |||||||| || || || Sbjct 140398491 GCAAAGATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGCCTTCTTTATCCTGGAT 140398550 Query 64357 TTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCC 64416 || ||| ||| |||| || |||| || |||||||| | || | ||||||||| Sbjct 140398551 CTTGGCCTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCC 140398610 Query 64417 GGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || || ||||| || ||||| Sbjct 140398611 AGTCAGGGTCTTCACGAAGATCTGCAT 140398637 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| ||||||||||| || || |||| | ||||| | ||||||||| || Sbjct 153223749 GACTCTTTCTGAATGTTGTAGTCACAAACAGTGCAGCCATCTTCTAACTGCTTGCCTACA 153223808 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | ||||| | |||||||| || || || || ||||| | || || || ||| ||| Sbjct 153223809 AAGATGAGACTGTGCTGGTCAGGGGGGATGCCCTCTTTAACATGGATCTTGGCCTTCACA 153223868 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 | | | |||| | ||||| || | || | |||||||| ||||| ||||| Sbjct 153223869 TTTTGGAGGATGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTTTTC 153223928 Query 64430 ACGAAAATTTGCATTTT 64446 | ||| ||||||||||| Sbjct 153223929 AGGAAGATTTGCATTTT 153223945 >seq8 Length=162613886 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || |||||||||||||| || | Sbjct 160503472 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTTGTAGTCAG- 160503414 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| || |||||||| ||| | || || | ||||| || ||||| Sbjct 160503413 -ACAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 160503355 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||| || || || Sbjct 160503354 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAAC 160503295 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | || | |||||| || || | ||||||| | |||| |||||||| Sbjct 160503294 CTTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTTATGGAAATCTGCATTTT 160503244 >seq24 Length=155392059 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| |||| ||||||| || | || |||||||||||| | || | | || || | Sbjct 3658036 TCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCC 3657977 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| || ||||||||||| || || Sbjct 3657976 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTT 3657917 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | | ||| || || || || | || | Sbjct 3657916 ATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGAT 3657857 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || | | ||||| |||||||| |||| ||| Sbjct 3657856 GGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCAGTTT 3657818 >seq7 Length=173848474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| |||| || | Sbjct 115442974 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGA 115442915 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || ||||| || ||| | || || | ||||| || ||||| Sbjct 115442914 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 115442855 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | ||||| || || | Sbjct 115442854 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGC 115442795 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| | | | ||||| |||||||| |||||||| Sbjct 115442794 CTCGAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 115442744 >seq18 Length=83442489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| ||| | ||| | ||||| || || ||||||||||| ||||| | | Sbjct 46140274 ACCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGA 46140333 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | ||||| || |||||||| ||| | || | | ||||| || ||||| Sbjct 46140334 CAAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 46140393 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | ||||| | || || Sbjct 46140394 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCAAC 46140453 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | || ||||| || || | ||||| |||||||| |||||||| Sbjct 46140454 CTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46140504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499580633116560