Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq18 93.3 3e-14 seq17 91.5 1e-13 seq21 82.4 5e-11 >seq18 Length=83442489 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| ||| || || |||||||||||||| |||||||| || ||||| | Sbjct 46140275 CCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGAC 46140334 Query 15010 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | || | ||||| | ||| |||||||| | ||| | || || || || Sbjct 46140335 AAAGTATATC-CATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 46140393 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTA 15127 |||||||||||| || || ||| |||||| ||||||| ||||| | || ||| | Sbjct 46140394 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATC-CAATGGTTCAA 46140452 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | | ||| | || || || || || ||||| || ||||| ||||| || Sbjct 46140453 CCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46140504 >seq17 Length=90481686 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 60459949 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 60460008 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | || |||||||| | |||| | ||| || || ||| Sbjct 60460009 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 60460068 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 60460069 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 60460128 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 60460129 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178 >seq21 Length=62195757 Score = 82.4 bits (90), Expect = 5e-11 Identities = 154/227 (68%), Gaps = 11/227 (5%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 34489767 CCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC---- 34489712 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||||| | ||| |||||||| |||| | | || | || ||| Sbjct 34489711 AGA-------CATCTTCCAGTTGCTTGCCAGCAAATATTAGTCTTTGCCGATCAGGAGGA 34489659 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| | |||||| || || | ||||| ||| || Sbjct 34489658 ATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTCCTGTCATATCGGAGGGTTCAACC 34489599 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | | ||| |||||| | ||||| || ||||| || ||||| ||||| Sbjct 34489598 TTGAGGGTGATGGTTCTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 34489552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357347249384090