Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq1 174 2e-38
seq10 127 3e-24
seq2750 98.7 1e-15
>seq1
Length=229774977
Score = 174 bits (192), Expect = 2e-38
Identities = 173/224 (77%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || ||||||||||| ||||||||||| || || || ||||| || |||||||| ||
Sbjct 166360508 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 166360567
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | ||||||
Sbjct 166360568 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 166360627
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
| || | |||||| ||||| || |||| || || |||| || | || | ||| |
Sbjct 166360628 AACTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 166360687
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
|||| || |||||||| ||||| |||||||| || || |||||
Sbjct 166360688 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 166360731
Score = 172 bits (190), Expect = 8e-38
Identities = 209/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| |||||||| || || ||||| |||||||| | || || || | |||
Sbjct 166358512 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 166358571
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| ||||| || || || || || ||||| || |||||||| || || || || || ||
Sbjct 166358572 TGAAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACA 166358631
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| || || || || | || | ||| ||||||| |||
Sbjct 166358632 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 166358691
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||| | || || || ||||| || | | | ||| || || || ||||| |||| |
Sbjct 166358692 ATGGCATCTGGCCGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCACAGCATCGATG 166358751
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| |||||||| ||||||||||| |||| || ||||| || |||
Sbjct 166358752 TCACCATAGAGTGCTTCCAACTCTGCAGACATTTCCTTTTCTCCT 166358796
Score = 113 bits (124), Expect = 7e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
|||||||| || || | ||||| ||||||||| ||| || ||||| || | ||| |||
Sbjct 166362275 TCACCTTTGACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTAGTA 166362334
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| || || || || ||||||||||| ||||||||||| || |||||
Sbjct 166362335 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGTT 166362394
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||||||||||| | || ||||||
Sbjct 166362395 GGTGGACTGTCAATCAAATGTGATCTGGCT 166362424
Score = 107 bits (118), Expect = 3e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| || | |||||||| || |||||| ||| ||| | ||
Sbjct 166361661 TCTTACCCCATGGCCCAGCCCGTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 166361720
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| ||| | ||||||||||||
Sbjct 166361721 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 166361780
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300
||||| || | || | | || | ||| |||||||||| ||||||| || || |
Sbjct 166361781 AGGGATGAACTTTCTTCTTAGAAGTAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 166361840
Query 10301 CGCCTTACCTGA 10312
| ||||||||
Sbjct 166361841 CTTTTTACCTGA 166361852
Score = 104 bits (114), Expect = 3e-17
Identities = 113/148 (76%), Gaps = 3/148 (2%)
Strand=Plus/Plus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || || |||| |||| || || ||||| |||||||||||| ||| |
Sbjct 166363336 CTTACGTGTTGAGCAGTTTTCTCCATAGAATCCTGTCCGGGTACAATCGCACTTATACTG 166363395
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||||| ||||| |||| ||||| ||||| || || || ||||| ||||||||||| ||
Sbjct 166363396 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACATGGGTGGGAACAGCAAGGATT 166363455
Query 10960 GGCTGCAATTTAAAAGATAG--AATAAA 10985
||||||| ||||| || || ||||||
Sbjct 166363456 TGCTGCAA-TTAAAGGACAGCAAATAAA 166363482
>seq10
Length=138149186
Score = 127 bits (140), Expect = 3e-24
Identities = 179/249 (72%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || ||||||| || || || || ||||| || ||||| || |||||||||
Sbjct 121858411 GTGGCCGTCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTAC 121858352
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
|||| || |||||| ||| | | ||| || || | |||||| |||||||| | |||
Sbjct 121858351 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 121858292
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111
|| || ||||| || ||||| | ||| | ||||| | || | || |||| |||
Sbjct 121858291 ATCATACTCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAA-GAAGCAGTCCAGGGTA 121858233
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || || | ||| ||||| | | |||||||| || || |||||||||||
Sbjct 121858232 GAACTCCAACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTC 121858173
Query 9172 ACCTACAAG 9180
||||||||
Sbjct 121858172 TCCTACAAG 121858164
>seq2750
Length=44035
Score = 98.7 bits (108), Expect = 1e-15
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 123126 AAGAAAACAGGTGGCGTCGCTGGTAGTGTTGGTGGACGAGATGAAGATGATTTTGGTGGT 123185
|||||| | |||||| | | || | ||| |||||||||||||||||| |||| |
Sbjct 20535 AAGAAAGCTGGTGGCCTGGTCGGCCGAGTTTACGGACGAGATGAAGATGATCTTGGCGTC 20476
Query 123186 GTTCTGAGCCAGAAAGCCCAGGATGGTGTTAAACGCCTCCTTCTTAATAAAATGAGCCTC 123245
|||||| || |||||||||||| | | ||||||||||| ||||| | |||||
Sbjct 20475 CTTCTGAAGCATAAAGCCCAGGATCGCCGGCAGGGCCTCCTTCTTGATAAAGTTGGCCTC 20416
Query 123246 GTCAACCAGCAGGAGGTGAAAATTTTGCCCGCGGATACTCTG 123287
|| || | || ||||||||| | ||||| || || |||||
Sbjct 20415 ATCCACAAACAAGAGGTGAAATGTCTGCCCCCGAATGCTCTG 20374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723635055231600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |