Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq17 104 3e-17 seq13 104 3e-17 seq9 100 3e-16 seq1 95.1 1e-14 seq9876 87.8 2e-12 >seq2 Length=114371477 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 110580063 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 110580004 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||||| || Sbjct 110580003 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGG 110579944 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 110579943 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 110579884 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| ||||| || || ||||| || ||||| ||||||||| Sbjct 110579883 CTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 110579832 >seq17 Length=90481686 Score = 104 bits (114), Expect = 3e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | || Sbjct 60459963 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 60460022 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || ||||||||||| || || |||| | |||||| || | || | | ||||| || Sbjct 60460023 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 60460082 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||| || | ||| || || | |||||||| Sbjct 60460083 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 60460142 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || ||||| || || || ||||||||| Sbjct 60460143 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 60460179 >seq13 Length=135337776 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || |||| |||| |||| || ||| || ||||| |||||||| || Sbjct 126789303 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789362 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||| || || || || ||||| | ||||||||| | || Sbjct 126789363 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789422 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| |||||| |||| || | | ||||| || | || || Sbjct 126789423 ATGCCTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 126789482 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| || || || || || ||||||||||| Sbjct 126789483 TCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529 >seq9 Length=144709823 Score = 100 bits (110), Expect = 3e-16 Identities = 162/229 (71%), Gaps = 18/229 (8%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | |||| |||||| |||| || ||| || ||||| |||||||| | Sbjct 122689514 TGCCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTG 122689455 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| ||||| || | ||||| ||||||||||| | | Sbjct 122689454 AGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTG 122689395 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||| | ||| |||| || || ||||||| Sbjct 122689394 GGATGCCCTCCTTGTCC-TGA-----ATTTTG-GCGTTGC-----TG-GGCTCGAT---- 122689352 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| || || || || |||||||| ||||| Sbjct 122689351 -CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 122689304 >seq1 Length=229774977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| | ||| | |||| ||||| | || || ||| || ||||| |||||||| || Sbjct 198269171 GCCACGTCTCAGACGCTGGACCAGGTACAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 198269230 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||||| | | || || |||||| |||| || || || | | ||||||||||| | Sbjct 198269231 AAGAGTACAGCCATCTTCTAGCTGCATGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGAG 198269290 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| ||| || ||| | | | | ||||| || | ||||| Sbjct 198269291 GATGCCTTCCTTATCCTGGATATTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 198269350 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 198269351 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 198269402 >seq9876 Length=376000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| |||||||||| || ||| || ||||| |||||||| || Sbjct 278179 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 278120 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||| ||| | || || ||||||||||| || || || | ||||||||| || Sbjct 278119 AGACTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGA 278060 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 || || || || ||| || ||||| | | | ||| | || | ||||| Sbjct 278059 TTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACT 278000 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||| | ||||| || || ||||| || ||||| ||||||||| Sbjct 277999 TCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 277949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565165809258480