Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_015049.1
Length=124335
Score E
Sequences producing significant alignments: (Bits) Value
seq2750 163 2e-35
>seq2750
Length=44035
Score = 163 bits (180), Expect = 2e-35
Identities = 359/535 (67%), Gaps = 10/535 (2%)
Strand=Plus/Minus
Query 46754 GATGCCAACCTGACTCAC-AATATAAAGCAATCAGCAGCAGAGGGGCTGTTTAAAAGTTT 46812
||||||||||| |||| | || | ||| ||||| || |||||||||||| | || ||
Sbjct 28477 GATGCCAACCT-ACTCTCGAACCTGCGGCAGTCAGCGGCCGAGGGGCTGTTTCACAGCTT 28419
Query 46813 TCAGCTGCTTGTGGGAAAAGATGCCAGGGAGAATGCAGTAAAGTTTGAGGCTCTCTTGGG 46872
| | ||||| ||||| || ||||| || ||| | | |||||||| | || | ||
Sbjct 28418 TGACCTGCTGGTGGGCAAGGATGCTAGAGAGTCGGGCATCAAGTTTGAAGTGCTGCTTGG 28359
Query 46873 GGTATACACCAATGCAGTTCAATTTGTGAAATTCATAGAAACTGGACTGGCCATATCATG 46932
||| ||||| || || | |||| ||| || | || || | |||||| | || ||
Sbjct 28358 GGTCTACACGAACGCTATCCAATACGTGCGCTTTCTGGAGACGGCACTGGCTGTGTCCTG 28299
Query 46933 TGTCAACACAGAGTTTAAAGATTTAAGGAAGATGGTTGAAGGAAAAATACAGTTCAAGGT 46992
||| ||||| || || ||||| | || ||| || || || || || || | |
Sbjct 28298 TGTGAACACGGAATTCAAAGACCTGAGTCGTATGACGGATGGCAAGATTCAATTTAGAAT 28239
Query 46993 GTCAATACCCACCATAGCCCACGGGGATGGGAGAAGACCAAATAAACAAAGGCAGTACAT 47052
|| | ||||| || || ||||||||||| || ||||| | ||| || || | |||
Sbjct 28238 CTCCGTCCCCACAATTGCTCACGGGGATGGAAGGAGACCCAGTAAGCAGCGGACCTTCAT 28179
Query 47053 TGTTATGAGGGCATGTCAAAAATATCACATAACTGCTGAGATTGAACTCTCCACAGAAGA 47112
||| | | | || || ||| | ||||| | | | || || || || |||| ||
Sbjct 28178 TGTGGTCAAGAATTGCCACAAACACCACATCAGTACGGAAATCGAGCTGTCCATGCTGGA 28119
Query 47113 CATTCAGCTCCTCTTTGCTGAACAT----GAAACTCCCTTAGACTTTACAGAACACGTGG 47168
| | || ||| ||| | ||| || || || | || | | | || ||||||
Sbjct 28118 CCTGGAGATCC----TGCACAGCATCCCCGAGACCCCTGTCGAATATGCGGAGTACGTGG 28063
Query 47169 GGGCCATCAAGACCATAACCCATGCCCTGCAGTTTGGGGTTGATGCGCTGGAGAGGGGAC 47228
|||| |||||||| | || ||||| ||||||||||| ||||| || |||||||| |
Sbjct 28062 GGGCTGTCAAGACCGTGGCCTCGGCCCTACAGTTTGGGGTCGATGCCCTAGAGAGGGGCC 28003
Query 47229 TTATAAATACAGTGCTGCACGCGAAGCTCAGAAATGCCCCTCCCGCCTTTATACT 47283
| || || || || ||| || |||||| | ||||||| ||| ||||| ||
Sbjct 28002 TCATCAACACGGTCCTGAGCGTAAAGCTCCGCCATGCCCCACCCATGTTTATCCT 27948
Score = 150 bits (166), Expect = 1e-31
Identities = 772/1204 (64%), Gaps = 49/1204 (4%)
Strand=Plus/Minus
Query 49646 CAGCTGATGGCAGAATATGAAGAGTGGCACAGATCACCCATGCTGGCCTATGTACTGC-- 49703
||||| | ||||| || ||||||||| | || |||||| ||| || | | ||
Sbjct 25567 CAGCTCTTCGCAGAGTACCGGGAGTGGCACCGCTCGCCCATG--GGCAAATATGCGGCCG 25510
Query 49704 AATGTGACCCTGCCCCTGCTGCCCTCAGTGCTTTGTTGGCCATGCACCTTAAATTGTCTC 49763
||||| ||| ||| | | | |||||| || ||||||||| | || |||| |
Sbjct 25509 AATGTCTTCCTTCCCTCGTTTCAATCAGTGGAATGACAGCCATGCACATCAAGATGTCCC 25450
Query 49764 CCGTGGGGTTTATATCTATGGC-AAGATCCAAGATACATCCTGGAGTGGCCATGACAGTT 49822
|||||| | ||| | ||| ||| || ||||| || || || ||||| ||||| ||
Sbjct 25449 CCGTGGCCTATATTGCCCAGGCCAAGCTC-AAGATCCACCCCGGGGTGGCAATGACCGTG 25391
Query 49823 GTGAGGACCGATGAGGTCTTATCTGAAAATGTCTTGTACAGTTCAAAGGCATCAACTTCT 49882
|| |||||||||||| || | || ||||| |||||| |||||| | ||| || || ||
Sbjct 25390 GTCAGGACCGATGAGATCCTCTCCGAAAACATCTTGTTCAGTTCTAGGGCCTCTACCTCC 25331
Query 49883 GTATTCATCGGAAGACCAGTTGTGAACAGGCGGGAGGCCAGAACAGATGCAGTCACATTC 49942
| ||||| || | || || | | | ||||||||||| || || || || ||
Sbjct 25330 ATGTTCATTGGGACCCCCAACGTCAGCCGCCGGGAGGCCAGGGTGGACGCGGTGACCTTT 25271
Query 49943 GATATTAACAACGAGCTGGCCTCATTGGATACATCCATGGGCTACAACTCTACCATAATT 50002
|| | | |||| ||||||| | || || | |||| | || ||||| |
Sbjct 25270 GAGGTGCATCACGAAATGGCCTCCATCGACACTGGGCTCAGCTATAGTTCGACCATGACC 25211
Query 50003 CCCGCCACAGCTACAGCTGTGACTACAGATATGGGAATCCATTGCCAGGACCTGTTTGGA 50062
|| |||| | | || | |||||||| ||||||||||| ||| ||| | ||| |
Sbjct 25210 CCGGCCAGGGTGGCTGCCATCACTACAGACATGGGAATCCACACCCAAGACTTCTTTAGC 25151
Query 50063 ATGTACCCGACAGATGCCTTCAGACAGAGAG-AGTTCCATAATTATGTCAAACAGAAAGC 50121
| | || | || ||||| | || || || || || | || || || |||
Sbjct 25150 GTCTTTCCCGCCGAGGCCTT-TGCCAATCAGCAGGTCAATGACTACATC-AAGGCCAAGG 25093
Query 50122 TGGAGCCGATGGAACAGCGC---CCGCCCCAG-TCAGGGATCCCTTAATTTTCATGGCAG 50177
||| || | |||||| | | | | || |||| ||| | | | |||| |
Sbjct 25092 TGG-GC-----GCTCAGCGCAATGGGACGCTGATCCGGGACCCCAGGACATACCTGGCGG 25039
Query 50178 GTGATGGGCACAGGAGTGATATG-----CCTGGCCTGTACCATGGACAAGTTGCCACTTG 50232
|| ||| || || | ||| || || || | ||||| || ||||| ||
Sbjct 25038 GT-ATG---ACTAACGTCA-ATGGAGCTCCAGGACTCTGTCATGGCCAGCAGGCCACCTG 24984
Query 50233 CGAGGTGATCCTTACCCCAGTAACTGCAGATGTTGCTTACTTTCAGAGCCCAAACAGTCC 50292
||| | ||| | ||||| || || ||||| || || || ||||| | | ||| ||
Sbjct 24983 TGAGATTATCGTGACCCCGGTCACGGCAGACGTGGCCTATTTTCAAAAGTCCAACTCCCC 24924
Query 50293 CAGGGGACGGGCTGGATGTGTAGTGTCATGTGACACTTACAGTCCTGACAATGCTGTGAA 50352
|| || || |||| || || || || ||||| | |||| || || || | |
Sbjct 24923 AAGAGGGCGTGCTGCCTGCGTGGTCTCCTGTGAAAACTACAATCAGGAGGCCGCCGAGGG 24864
Query 50353 GCTGTTATATGATCACAGCCTTCCAGACCCCGCATATGAATTTAGAGCCACCAATAATCC 50412
||| | ||||| || || ||| || |||| || || | | |||| || ||
Sbjct 24863 GCTCATCTATGACCATTCCCGTCCGGATGCCGCCTACGAGTACCGGAGCACCGTGAACCC 24804
Query 50413 CTGGGCGTCGCAGGCTGGG-TCCCTTGGAGACACATTGTACAAC----AATGTCAACAGA 50467
|||||| || || |||||| ||||| || |||| |||||||| | || ||||
Sbjct 24803 CTGGGCCTCTCA-GCTGGGTTCCCTGGGTGACATTATGTACAACTCCTCCTATCGCCAGA 24745
Query 50468 CAACTCGTTACCCCTGGCATGTATAGCCCATGCAGGCAATATTTTAACAGGGACCAGCTT 50527
| | ||| ||| ||| | || ||||| ||| | || ||| |||| ||| ||||
Sbjct 24744 CGGC-CGT---CCCGGGCCTCTACAGCCCTTGCCGAGCATTTTTCAACAAGGAGGAGCTG 24689
Query 50528 CTGAAAAACAACAAATGCCTACATACCTTAGTTGGCGAGTATTCATC--TCGCATCGG-G 50584
||| ||||||| | || | | | | || |||||| || | ||| | || |
Sbjct 24688 CTGCGCAACAACAGGGGGCTCTACAACATGGTCAACGAGTA--CAGCCAGCGCCTGGGTG 24631
Query 50585 GGCTCACCTGCTACTAGTAACACAGATATTCAGTATGTGTTGGTAAATGGCACAGACGTG 50644
||| | || || || || ||||| || | |||| |||| || | || || ||||||
Sbjct 24630 GGCAC-CCGGCGACCAGCAACACCGAGGTGCAGTTTGTGGTGATCGCGGGGACTGACGTG 24572
Query 50645 TTTCTGGATCAGCCCTGTCTCTTACTGCAAGAAGCATACCCAACTCTATCAGCCAGCCAT 50704
|| ||||| || || || ||| || || || || | ||| | || || ||| | |
Sbjct 24571 TTCCTGGAGCAACCATGCAGCTTCCTTCAGGAGGCGTTCCCCGCACTCTCGGCC--TCCT 24514
Query 50705 AAAGGG--CTGATAGATGAGCTCATGTCTCACaaaaaaaCTCATGCTCCTGTACACCATG 50762
|||| || || |||||| | |||||| |||| | || || || || || || |||
Sbjct 24513 CCAGGGCACTCATCGATGAGTTTATGTCTGTCAAACAGACCCACGCCCCCGTCCATTATG 24454
Query 50763 GGCAGTATCTGTTGGAGGAAGTTGCGCCCCTAAAAAGAGTATTAAAGATTGGAAACAAGG 50822
| || ||| | | || || || ||||| | |||| |||||||| ||||||| || |
Sbjct 24453 GACACTATATAATTGAAGAGGTGGCGCCGGTGCGAAGAATATTAAAGTTTGGAAATAAAG 24394
Query 50823 TGGT 50826
| ||
Sbjct 24393 TTGT 24390
Score = 140 bits (154), Expect = 3e-28
Identities = 220/315 (70%), Gaps = 0/315 (0%)
Strand=Plus/Minus
Query 53704 ATGGTGATGTAACTAGGTATGTAAAGTTTAAAGCATGGGCAGGCTGTAATACTGTCCTGT 53763
|||||||||||| || || | || |||||| ||||| | || ||||||||
Sbjct 20675 ATGGTGATGTAAGACGGGATATGCAGGCGAAAGCAGGGGCACGAGACCATGCTGTCCTGC 20616
Query 53764 TTGCTGAAATCTTCCATGTGCTCATCACATACATAATTTACCACATTTAAAACTTTTTCT 53823
|| ||||||| | | ||||| | ||| |||||| ||||||| || | | ||
Sbjct 20615 ATGTCAAAATCTTGCCTATGCTCCTGACACACATAACTTACCACGTTCAGCAGCCGCTCC 20556
Query 53824 TGGGCATCTTTTAAATCATACAAAAAGCTTGTTGTTTTTTCACCAGAGTTCACACTGGAT 53883
|| || || || | | ||| | |||||| || | | || | ||||| || ||
Sbjct 20555 TGAGCGTCCTTCAGCTTATAAAGAAAGCTGGTGGCCTGGTCGGCCGAGTTTACGGACGAG 20496
Query 53884 ATAAATATAAGTTTTGCATCCTTCTGTAGCATAAATCCCAAAATAGCAGGCAGAGCTTCT 53943
|| || || | || || |||||||| |||||||| |||| || || ||||| || ||
Sbjct 20495 ATGAAGATGATCTTGGCGTCCTTCTGAAGCATAAAGCCCAGGATCGCCGGCAGGGCCTCC 20436
Query 53944 TTCTTTATAAAGTTAGCTTCATCAATATAAAGTAGATTAAATGTCTGGCCCCGAATGCTC 54003
||||| |||||||| || ||||| | | | | || | ||||||||| ||||||||||||
Sbjct 20435 TTCTTGATAAAGTTGGCCTCATCCACAAACAAGAGGTGAAATGTCTGCCCCCGAATGCTC 20376
Query 54004 TGAAAAGAAAAAAGA 54018
|||||| | |||||
Sbjct 20375 TGAAAAACAGAAAGA 20361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397697396332944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |