Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq2750 163 2e-35 >seq2750 Length=44035 Score = 163 bits (180), Expect = 2e-35 Identities = 359/535 (67%), Gaps = 10/535 (2%) Strand=Plus/Minus Query 46754 GATGCCAACCTGACTCAC-AATATAAAGCAATCAGCAGCAGAGGGGCTGTTTAAAAGTTT 46812 ||||||||||| |||| | || | ||| ||||| || |||||||||||| | || || Sbjct 28477 GATGCCAACCT-ACTCTCGAACCTGCGGCAGTCAGCGGCCGAGGGGCTGTTTCACAGCTT 28419 Query 46813 TCAGCTGCTTGTGGGAAAAGATGCCAGGGAGAATGCAGTAAAGTTTGAGGCTCTCTTGGG 46872 | | ||||| ||||| || ||||| || ||| | | |||||||| | || | || Sbjct 28418 TGACCTGCTGGTGGGCAAGGATGCTAGAGAGTCGGGCATCAAGTTTGAAGTGCTGCTTGG 28359 Query 46873 GGTATACACCAATGCAGTTCAATTTGTGAAATTCATAGAAACTGGACTGGCCATATCATG 46932 ||| ||||| || || | |||| ||| || | || || | |||||| | || || Sbjct 28358 GGTCTACACGAACGCTATCCAATACGTGCGCTTTCTGGAGACGGCACTGGCTGTGTCCTG 28299 Query 46933 TGTCAACACAGAGTTTAAAGATTTAAGGAAGATGGTTGAAGGAAAAATACAGTTCAAGGT 46992 ||| ||||| || || ||||| | || ||| || || || || || || | | Sbjct 28298 TGTGAACACGGAATTCAAAGACCTGAGTCGTATGACGGATGGCAAGATTCAATTTAGAAT 28239 Query 46993 GTCAATACCCACCATAGCCCACGGGGATGGGAGAAGACCAAATAAACAAAGGCAGTACAT 47052 || | ||||| || || ||||||||||| || ||||| | ||| || || | ||| Sbjct 28238 CTCCGTCCCCACAATTGCTCACGGGGATGGAAGGAGACCCAGTAAGCAGCGGACCTTCAT 28179 Query 47053 TGTTATGAGGGCATGTCAAAAATATCACATAACTGCTGAGATTGAACTCTCCACAGAAGA 47112 ||| | | | || || ||| | ||||| | | | || || || || |||| || Sbjct 28178 TGTGGTCAAGAATTGCCACAAACACCACATCAGTACGGAAATCGAGCTGTCCATGCTGGA 28119 Query 47113 CATTCAGCTCCTCTTTGCTGAACAT----GAAACTCCCTTAGACTTTACAGAACACGTGG 47168 | | || ||| ||| | ||| || || || | || | | | || |||||| Sbjct 28118 CCTGGAGATCC----TGCACAGCATCCCCGAGACCCCTGTCGAATATGCGGAGTACGTGG 28063 Query 47169 GGGCCATCAAGACCATAACCCATGCCCTGCAGTTTGGGGTTGATGCGCTGGAGAGGGGAC 47228 |||| |||||||| | || ||||| ||||||||||| ||||| || |||||||| | Sbjct 28062 GGGCTGTCAAGACCGTGGCCTCGGCCCTACAGTTTGGGGTCGATGCCCTAGAGAGGGGCC 28003 Query 47229 TTATAAATACAGTGCTGCACGCGAAGCTCAGAAATGCCCCTCCCGCCTTTATACT 47283 | || || || || ||| || |||||| | ||||||| ||| ||||| || Sbjct 28002 TCATCAACACGGTCCTGAGCGTAAAGCTCCGCCATGCCCCACCCATGTTTATCCT 27948 Score = 150 bits (166), Expect = 1e-31 Identities = 772/1204 (64%), Gaps = 49/1204 (4%) Strand=Plus/Minus Query 49646 CAGCTGATGGCAGAATATGAAGAGTGGCACAGATCACCCATGCTGGCCTATGTACTGC-- 49703 ||||| | ||||| || ||||||||| | || |||||| ||| || | | || Sbjct 25567 CAGCTCTTCGCAGAGTACCGGGAGTGGCACCGCTCGCCCATG--GGCAAATATGCGGCCG 25510 Query 49704 AATGTGACCCTGCCCCTGCTGCCCTCAGTGCTTTGTTGGCCATGCACCTTAAATTGTCTC 49763 ||||| ||| ||| | | | |||||| || ||||||||| | || |||| | Sbjct 25509 AATGTCTTCCTTCCCTCGTTTCAATCAGTGGAATGACAGCCATGCACATCAAGATGTCCC 25450 Query 49764 CCGTGGGGTTTATATCTATGGC-AAGATCCAAGATACATCCTGGAGTGGCCATGACAGTT 49822 |||||| | ||| | ||| ||| || ||||| || || || ||||| ||||| || Sbjct 25449 CCGTGGCCTATATTGCCCAGGCCAAGCTC-AAGATCCACCCCGGGGTGGCAATGACCGTG 25391 Query 49823 GTGAGGACCGATGAGGTCTTATCTGAAAATGTCTTGTACAGTTCAAAGGCATCAACTTCT 49882 || |||||||||||| || | || ||||| |||||| |||||| | ||| || || || Sbjct 25390 GTCAGGACCGATGAGATCCTCTCCGAAAACATCTTGTTCAGTTCTAGGGCCTCTACCTCC 25331 Query 49883 GTATTCATCGGAAGACCAGTTGTGAACAGGCGGGAGGCCAGAACAGATGCAGTCACATTC 49942 | ||||| || | || || | | | ||||||||||| || || || || || Sbjct 25330 ATGTTCATTGGGACCCCCAACGTCAGCCGCCGGGAGGCCAGGGTGGACGCGGTGACCTTT 25271 Query 49943 GATATTAACAACGAGCTGGCCTCATTGGATACATCCATGGGCTACAACTCTACCATAATT 50002 || | | |||| ||||||| | || || | |||| | || ||||| | Sbjct 25270 GAGGTGCATCACGAAATGGCCTCCATCGACACTGGGCTCAGCTATAGTTCGACCATGACC 25211 Query 50003 CCCGCCACAGCTACAGCTGTGACTACAGATATGGGAATCCATTGCCAGGACCTGTTTGGA 50062 || |||| | | || | |||||||| ||||||||||| ||| ||| | ||| | Sbjct 25210 CCGGCCAGGGTGGCTGCCATCACTACAGACATGGGAATCCACACCCAAGACTTCTTTAGC 25151 Query 50063 ATGTACCCGACAGATGCCTTCAGACAGAGAG-AGTTCCATAATTATGTCAAACAGAAAGC 50121 | | || | || ||||| | || || || || || | || || || ||| Sbjct 25150 GTCTTTCCCGCCGAGGCCTT-TGCCAATCAGCAGGTCAATGACTACATC-AAGGCCAAGG 25093 Query 50122 TGGAGCCGATGGAACAGCGC---CCGCCCCAG-TCAGGGATCCCTTAATTTTCATGGCAG 50177 ||| || | |||||| | | | | || |||| ||| | | | |||| | Sbjct 25092 TGG-GC-----GCTCAGCGCAATGGGACGCTGATCCGGGACCCCAGGACATACCTGGCGG 25039 Query 50178 GTGATGGGCACAGGAGTGATATG-----CCTGGCCTGTACCATGGACAAGTTGCCACTTG 50232 || ||| || || | ||| || || || | ||||| || ||||| || Sbjct 25038 GT-ATG---ACTAACGTCA-ATGGAGCTCCAGGACTCTGTCATGGCCAGCAGGCCACCTG 24984 Query 50233 CGAGGTGATCCTTACCCCAGTAACTGCAGATGTTGCTTACTTTCAGAGCCCAAACAGTCC 50292 ||| | ||| | ||||| || || ||||| || || || ||||| | | ||| || Sbjct 24983 TGAGATTATCGTGACCCCGGTCACGGCAGACGTGGCCTATTTTCAAAAGTCCAACTCCCC 24924 Query 50293 CAGGGGACGGGCTGGATGTGTAGTGTCATGTGACACTTACAGTCCTGACAATGCTGTGAA 50352 || || || |||| || || || || ||||| | |||| || || || | | Sbjct 24923 AAGAGGGCGTGCTGCCTGCGTGGTCTCCTGTGAAAACTACAATCAGGAGGCCGCCGAGGG 24864 Query 50353 GCTGTTATATGATCACAGCCTTCCAGACCCCGCATATGAATTTAGAGCCACCAATAATCC 50412 ||| | ||||| || || ||| || |||| || || | | |||| || || Sbjct 24863 GCTCATCTATGACCATTCCCGTCCGGATGCCGCCTACGAGTACCGGAGCACCGTGAACCC 24804 Query 50413 CTGGGCGTCGCAGGCTGGG-TCCCTTGGAGACACATTGTACAAC----AATGTCAACAGA 50467 |||||| || || |||||| ||||| || |||| |||||||| | || |||| Sbjct 24803 CTGGGCCTCTCA-GCTGGGTTCCCTGGGTGACATTATGTACAACTCCTCCTATCGCCAGA 24745 Query 50468 CAACTCGTTACCCCTGGCATGTATAGCCCATGCAGGCAATATTTTAACAGGGACCAGCTT 50527 | | ||| ||| ||| | || ||||| ||| | || ||| |||| ||| |||| Sbjct 24744 CGGC-CGT---CCCGGGCCTCTACAGCCCTTGCCGAGCATTTTTCAACAAGGAGGAGCTG 24689 Query 50528 CTGAAAAACAACAAATGCCTACATACCTTAGTTGGCGAGTATTCATC--TCGCATCGG-G 50584 ||| ||||||| | || | | | | || |||||| || | ||| | || | Sbjct 24688 CTGCGCAACAACAGGGGGCTCTACAACATGGTCAACGAGTA--CAGCCAGCGCCTGGGTG 24631 Query 50585 GGCTCACCTGCTACTAGTAACACAGATATTCAGTATGTGTTGGTAAATGGCACAGACGTG 50644 ||| | || || || || ||||| || | |||| |||| || | || || |||||| Sbjct 24630 GGCAC-CCGGCGACCAGCAACACCGAGGTGCAGTTTGTGGTGATCGCGGGGACTGACGTG 24572 Query 50645 TTTCTGGATCAGCCCTGTCTCTTACTGCAAGAAGCATACCCAACTCTATCAGCCAGCCAT 50704 || ||||| || || || ||| || || || || | ||| | || || ||| | | Sbjct 24571 TTCCTGGAGCAACCATGCAGCTTCCTTCAGGAGGCGTTCCCCGCACTCTCGGCC--TCCT 24514 Query 50705 AAAGGG--CTGATAGATGAGCTCATGTCTCACaaaaaaaCTCATGCTCCTGTACACCATG 50762 |||| || || |||||| | |||||| |||| | || || || || || || ||| Sbjct 24513 CCAGGGCACTCATCGATGAGTTTATGTCTGTCAAACAGACCCACGCCCCCGTCCATTATG 24454 Query 50763 GGCAGTATCTGTTGGAGGAAGTTGCGCCCCTAAAAAGAGTATTAAAGATTGGAAACAAGG 50822 | || ||| | | || || || ||||| | |||| |||||||| ||||||| || | Sbjct 24453 GACACTATATAATTGAAGAGGTGGCGCCGGTGCGAAGAATATTAAAGTTTGGAAATAAAG 24394 Query 50823 TGGT 50826 | || Sbjct 24393 TTGT 24390 Score = 140 bits (154), Expect = 3e-28 Identities = 220/315 (70%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 53704 ATGGTGATGTAACTAGGTATGTAAAGTTTAAAGCATGGGCAGGCTGTAATACTGTCCTGT 53763 |||||||||||| || || | || |||||| ||||| | || |||||||| Sbjct 20675 ATGGTGATGTAAGACGGGATATGCAGGCGAAAGCAGGGGCACGAGACCATGCTGTCCTGC 20616 Query 53764 TTGCTGAAATCTTCCATGTGCTCATCACATACATAATTTACCACATTTAAAACTTTTTCT 53823 || ||||||| | | ||||| | ||| |||||| ||||||| || | | || Sbjct 20615 ATGTCAAAATCTTGCCTATGCTCCTGACACACATAACTTACCACGTTCAGCAGCCGCTCC 20556 Query 53824 TGGGCATCTTTTAAATCATACAAAAAGCTTGTTGTTTTTTCACCAGAGTTCACACTGGAT 53883 || || || || | | ||| | |||||| || | | || | ||||| || || Sbjct 20555 TGAGCGTCCTTCAGCTTATAAAGAAAGCTGGTGGCCTGGTCGGCCGAGTTTACGGACGAG 20496 Query 53884 ATAAATATAAGTTTTGCATCCTTCTGTAGCATAAATCCCAAAATAGCAGGCAGAGCTTCT 53943 || || || | || || |||||||| |||||||| |||| || || ||||| || || Sbjct 20495 ATGAAGATGATCTTGGCGTCCTTCTGAAGCATAAAGCCCAGGATCGCCGGCAGGGCCTCC 20436 Query 53944 TTCTTTATAAAGTTAGCTTCATCAATATAAAGTAGATTAAATGTCTGGCCCCGAATGCTC 54003 ||||| |||||||| || ||||| | | | | || | ||||||||| |||||||||||| Sbjct 20435 TTCTTGATAAAGTTGGCCTCATCCACAAACAAGAGGTGAAATGTCTGCCCCCGAATGCTC 20376 Query 54004 TGAAAAGAAAAAAGA 54018 |||||| | ||||| Sbjct 20375 TGAAAAACAGAAAGA 20361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397697396332944