Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 131 1e-25 seq8 122 6e-23 seq10 118 7e-22 seq15 105 4e-18 seq2 95.1 8e-15 seq4 93.3 3e-14 >seq13 Length=135337776 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||||| | ||| |||||||| ||||| ||||| || Sbjct 126789303 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789362 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || ||||| || | | |||||||| | || Sbjct 126789363 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789422 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| ||||||| | || | |||| || ||| || Sbjct 126789423 ATGCCTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 126789482 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || ||||| |||||||| ||||| ||||| Sbjct 126789483 TCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529 Score = 127 bits (140), Expect = 1e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 126789549 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 126789608 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||||||||| || | | |||||||| | || | || ||||| || Sbjct 126789609 AGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGG 126789668 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || |||||| |||| ||| ||||| | Sbjct 126789669 ATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCT 126789726 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||||||||||||||||||||| Sbjct 126789727 TACCAGTCAGAGTCTTCACAAAGATCTGCAT 126789757 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| |||||||| ||||| ||||| || || || | |||| ||| Sbjct 116540601 ACCAGGTGAAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAGAGACTGTGGCCATCCTCC 116540660 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||||| || | |||||||| || | | ||||||||||| Sbjct 116540661 AGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTCTTGG 116540720 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | ||||||| ||| || || | ||| ||||| | Sbjct 116540721 ATTTTAGCTTTGAC--ATTCTCAATGGTGTCACCGGGCTCCACCTCAAGGGTGATGGTCT 116540778 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||||||| || |||| |||||||||||| Sbjct 116540779 TGCCCGTGAGGGTGTTCATAAAGATCTGCAT 116540809 >seq8 Length=162613886 Score = 122 bits (134), Expect = 6e-23 Identities = 144/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||| | || | || |||| ||||||||||| || |||||| Sbjct 25941866 TCTTTCTGGATGTTGCAGTCTAAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAT 25941925 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | ||||||||||| ||| || ||||| || Sbjct 25941926 ATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGAC--AT 25941983 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | | |||| || ||| || |||| ||| ||||| || || ||||| ||||||| Sbjct 25941984 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 25942043 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 25942044 CAAAGATCTGCAT 25942056 >seq10 Length=138149186 Score = 118 bits (130), Expect = 7e-22 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 34793 TTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT 34852 |||||| | ||| ||||| || || | || |||| ||||||||||| | ||||||||| Sbjct 22465117 TTTCTGGACGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCTGGCAAATAT 22465058 Query 34853 TAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGC 34912 || || |||| ||| | || | ||||||||||| ||| ||| |||| || | Sbjct 22465057 CAGACGCTGCTTGTCAGGGGGGATACCCTCCTTGTCTTGAATTTTCGCACTGAC--ATTC 22465000 Query 34913 T--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || |||||||| ||||||||| Sbjct 22464999 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACA 22464940 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 22464939 AAGATCTGCAT 22464929 >seq15 Length=107357366 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||||||||| ||||| | || |||| |||| |||||| ||||| Sbjct 20294761 TCTTTCTGGATGTTATAGTCTGAAAGAGTACGGCCATCCTCCAACTGTTTGTTCACAAAT 20294702 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | |||||||||||| ||||| |||||| | Sbjct 20294701 ATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCGTGGATCTTGGCTTTGACATTT 20294642 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | |||| | || || || | ||| |||||||| || ||||| ||||| ||| Sbjct 20294641 TCACTGGTGTCACTTGGCTGGACCTCAAGGGTGATGGTTTTGCCTGTGAGGGTCTTTACA 20294582 Query 34971 AAGATCTGCAT 34981 |||||||||| Sbjct 20294581 GAGATCTGCAT 20294571 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||| | || || | | |||| |||||| |||| | | |||| Sbjct 57005303 TCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCATCCTCCAGCCGTTTCCTAGAAAAT 57005244 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||| || |||||| || Sbjct 57005243 ATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGAATTTTGGTTTTGAC--AT 57005186 Query 34911 GCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||| | | || || || || || | ||| ||||| || |||||||| ||||||| Sbjct 57005185 TCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCA 57005126 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 57005125 CAAAGATCTGCAT 57005113 >seq2 Length=114371477 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || |||||||| ||||| ||||| ||| Sbjct 110580062 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 110580003 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 110580002 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 110579943 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || || | | || | |||| || ||| || Sbjct 110579942 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 110579883 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || || || || ||||| ||||||||||| || Sbjct 110579882 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 110579833 >seq4 Length=205426864 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/209 (71%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||| | ||||| |||| || || |||| |||| ||| Sbjct 27700353 ACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGCAGTCTGAGAGAGTTCGGCCATCCTCC 27700294 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || |||| ||| || | |||||||| | || | |||||||||| | Sbjct 27700293 AGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGA-TACCTCCTTGTCTTGA 27700235 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||| || || || || | |||| | || || || | || ||||| | Sbjct 27700234 ATTTTGGCTTTCAC--ATTCTCAATGGTGTCACTTGGCTTGACGTCAAGAGTGATGGTCT 27700177 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 | |||||||| |||||||||||||||||| Sbjct 27700176 TGCCCGTGAGGGTCTTCACAAAGATCTGC 27700148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324592951206672