Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1 241 2e-58 seq7 100 4e-16 seq20 82.4 1e-10 >seq1 Length=229774977 Score = 241 bits (266), Expect = 2e-58 Identities = 247/323 (76%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| || | || || ||| | || |||||||| ||||| Sbjct 139772478 GTTTCACAAAGCAGCTCAACCCCATTGGTGGTCAACGGGATTCTGGGGGAGTCAGTAACT 139772419 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| || || |||||| |||| |||||||| |||| | ||| | Sbjct 139772418 CTTCCCCTGGAGTTTCCTGCAGGAGAGAAGGTCAACTCCATCACTTGGCTTTTCAATGAA 139772359 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| || | ||| || |||| || || | |||||| | || ||| Sbjct 139772358 ACATCTCTTGCCTTCATAGTACCCCATGAAACCAAAAGTCCAGAAATCCACGTGACTAAT 139772299 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 ||||||| ||| |||||||| |||||||| |||||||||||||| ||||| |||||||| Sbjct 139772298 CCGAAACAGGGAAAGCGACTGAACTTCACCCAGTCCTACTCCCTGCAACTCAGCAACCTG 139772239 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 ||||||||||||| || || ||||| |||| ||| || | |||||| | || || | Sbjct 139772238 AAGATGGAAGACACAGGCTCTTACAGAGCCCAGATAGCCACAGAGACCTCTGTAAAGCTG 139772179 Query 2178 TCCAGCTACACGCTGAGGATCTT 2200 ||||| ||||| |||||||| || Sbjct 139772178 TCCAGTTACACTCTGAGGATATT 139772156 Score = 215 bits (238), Expect = 6e-51 Identities = 242/324 (75%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| | ||||||||| || |||||||| ||||| Sbjct 141656011 GTTTCACAAAGCAGCTCAACCCCATTGATGGGGAATGGGGTTCTGGGGGAGTCAGTAACT 141656070 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| || || |||| |||| ||| |||||| |||| | ||| || Sbjct 141656071 CTTCCCCTGGAGTTTCCTGCAGGAGAGAGGATCCAGTTCATCACTTGGCTTTGCAATGGA 141656130 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| | | |||| || | ||| || || | ||| || | || || Sbjct 141656131 ACATCTTTTGCCTTCCTAGAACCCTATGAAGGCAAAAGTCCAAAAATCTACGTGACTCAT 141656190 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 |||||| | |||||||| | |||||| ||||||||||||| || || |||||||| Sbjct 141656191 CCGAAATGGCAAAAGCGACTGAGCTTCACCCAGTCCTACTCCCCGCAGCTCAGCAACCTG 141656250 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 ||||||||| |||| || | |||||||||| ||| || | |||||| | | || | Sbjct 141656251 GAGATGGAAAACACAGGCTTTTACAGTGCCCAGATAGCCACAGAGACCTCTGAAAAGCTG 141656310 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 ||||| ||||| |||||||| ||| Sbjct 141656311 TCCAGTTACACTCTGAGGATATTC 141656334 Score = 214 bits (236), Expect = 2e-50 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265 |||||| |||||| || || | |||||||||||| || | ||||||| ||| ||| ||| Sbjct 139767477 AACTGAGGAACATACAAGTTACCAATCACAGTCAGCTATTTCAGAATAGGACCTGTGAGC 139767418 Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325 |||||||||| || ||||| |||||| | ||||||| |||| |||| ||||||||||| Sbjct 139767417 TCCATCTGACTTGCTCTGTGGAGGATGCAGATGACAATGTCTCATTCAGATGGGAGGCCT 139767358 Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 |||| || || ||| | | |||| |||||||| ||||||||||||||||| || Sbjct 139767357 TGGGAAACACACTTTCAAGTCAGCCAAACCTCACTGTCTCCTGGGACCCCAGGATTTCCA 139767298 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| ||| ||||||| ||||| || || || ||||| || ||| | || ||| | ||| Sbjct 139767297 GTGAACAGGACTACACCTGCATAGCAGAGAATGCTGTCAGTAATTTATCCTTCTCTCTCT 139767238 Query 2446 CGGCCCAGAAGCTGTG 2461 | ||||||||||| || Sbjct 139767237 CTGCCCAGAAGCTTTG 139767222 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 2661 CACCTCAGACCAAAACATGCTAAACATAACACACCAGCA----GACTGACTCTTTGATAA 2716 ||| |||| ||||||||||||||| |||||||||||||| |||| ||||||||||| Sbjct 139762573 CACTTCAGGCCAAAACATGCTAAAGATAACACACCAGCACATTGACTCTCTCTTTGATAA 139762514 Query 2717 ATAAGCTAATGGAATTATGGTTGAC 2741 ||||| |||||||||||||||||| Sbjct 139762513 CTAAGCAAATGGAATTATGGTTGAC 139762489 >seq7 Length=173848474 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||||| ||||||||| || || | |||| Sbjct 31998255 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCTTGTCCAGAAGGCACCACCACAGCT 31998314 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || | |||||| ||||| | || || | |||| || || ||| Sbjct 31998315 GCCCACTTCTGGAAGGTTCTATCTCCTGCTGGCCTGGTCTCCACAAGCTCAGTGTCCTGA 31998374 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || || || || || | ||| || | | | || || || || || || |||| Sbjct 31998375 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 31998434 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 31998435 GCCCAGCACC 31998444 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 14520 GCAGCTTCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGT 14579 || || |||||||| | || || || || || ||||| || | ||| ||||| || | Sbjct 30334613 GCCGCCTCCCACTTGCGCTTGGTGATCTGAGCTGCCATGTCCGCCGCGGTCCAGGAGCTC 30334554 Query 14580 AGATCTTCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGA 14639 || || || || ||| || ||||| || |||||||| |||| ||| ||||| || || Sbjct 30334553 AGGTCCTCGTTCAGAGCGATGTAATCCTTGCCGTCGTAGGCGTGCTGTTCATACCCGCGG 30334494 Query 14640 ATGAAACTTCCATTTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGA 14695 | ||| | || | || || || ||||||||||| ||| || |||||||| Sbjct 30334493 AGGAAGCGCCCGTCGGGCCCCACGTCGCAGCCATACATCACCTGCATGGTGTGAGA 30334438 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229 |||||| || ||||| || || | || |||||||| ||| ||||||||||| || | Sbjct 31106171 CGGGTAGCCCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCA 31106112 Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289 | | |||| |||| || || || || ||||| || || || | || || | |||| | Sbjct 31106111 CCACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCCACAAGCTCCG 31106052 Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349 | || || | || | ||||| || | | ||| || | | | || || || || || | Sbjct 31106051 TGTCCTGGGTATGGCCCTCTCCATCCTGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGA 31105992 Query 14350 AACCCAAAGCCCAGCACC 14367 | |||| |||||||||| Sbjct 31105991 AGCCCAGGGCCCAGCACC 31105974 >seq20 Length=64411610 Score = 82.4 bits (90), Expect = 1e-10 Identities = 133/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 177663 AATCTAACCTACTCTACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAA 177722 || || |||| ||| ||||||||||| |||||| ||| |||||||| || || || Sbjct 47999495 AACCTGACCTGCTCCACAAATGACACTGGAATCTCCATCCGTTGGTTCTTCAAAAACCAG 47999436 Query 177723 AATATATCATCATCACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGAC 177782 | | | | || || ||| || |||||| || || | | | |||||||| ||| || Sbjct 47999435 AGTCTCCCGTCCTCGGAGAGGATGAAGCTGTCCCAGGGCAACACCACCCTCAGCATAAAC 47999376 Query 177783 CCGGTC--GAGAGAGGAT-TTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATGT 177839 || ||| ||| |||||| ||||||| || |||||||||| ||||| ||| | Sbjct 47999375 CCTGTCAAGAGGGAGGATGCTGGGACG-TATTGGTGTGAGGTCTTCAACCCAATCAGTAA 47999317 Query 177840 AAACCAAA 177847 ||||||| Sbjct 47999316 GAACCAAA 47999309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629202384305040