Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq1 241 2e-58
seq7 100 4e-16
seq20 82.4 1e-10
>seq1
Length=229774977
Score = 241 bits (266), Expect = 2e-58
Identities = 247/323 (76%), Gaps = 0/323 (0%)
Strand=Plus/Minus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| |||||| ||||| || | || || ||| | || |||||||| |||||
Sbjct 139772478 GTTTCACAAAGCAGCTCAACCCCATTGGTGGTCAACGGGATTCTGGGGGAGTCAGTAACT 139772419
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||||| ||||| || || |||||| |||| |||||||| |||| | ||| |
Sbjct 139772418 CTTCCCCTGGAGTTTCCTGCAGGAGAGAAGGTCAACTCCATCACTTGGCTTTTCAATGAA 139772359
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || | ||||| || | ||| || |||| || || | |||||| | || |||
Sbjct 139772358 ACATCTCTTGCCTTCATAGTACCCCATGAAACCAAAAGTCCAGAAATCCACGTGACTAAT 139772299
Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117
||||||| ||| |||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 139772298 CCGAAACAGGGAAAGCGACTGAACTTCACCCAGTCCTACTCCCTGCAACTCAGCAACCTG 139772239
Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177
||||||||||||| || || ||||| |||| ||| || | |||||| | || || |
Sbjct 139772238 AAGATGGAAGACACAGGCTCTTACAGAGCCCAGATAGCCACAGAGACCTCTGTAAAGCTG 139772179
Query 2178 TCCAGCTACACGCTGAGGATCTT 2200
||||| ||||| |||||||| ||
Sbjct 139772178 TCCAGTTACACTCTGAGGATATT 139772156
Score = 215 bits (238), Expect = 6e-51
Identities = 242/324 (75%), Gaps = 0/324 (0%)
Strand=Plus/Plus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| |||||| ||||| |||| | ||||||||| || |||||||| |||||
Sbjct 141656011 GTTTCACAAAGCAGCTCAACCCCATTGATGGGGAATGGGGTTCTGGGGGAGTCAGTAACT 141656070
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||||| ||||| || || |||| |||| ||| |||||| |||| | ||| ||
Sbjct 141656071 CTTCCCCTGGAGTTTCCTGCAGGAGAGAGGATCCAGTTCATCACTTGGCTTTGCAATGGA 141656130
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || | ||||| | | |||| || | ||| || || | ||| || | || ||
Sbjct 141656131 ACATCTTTTGCCTTCCTAGAACCCTATGAAGGCAAAAGTCCAAAAATCTACGTGACTCAT 141656190
Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117
|||||| | |||||||| | |||||| ||||||||||||| || || ||||||||
Sbjct 141656191 CCGAAATGGCAAAAGCGACTGAGCTTCACCCAGTCCTACTCCCCGCAGCTCAGCAACCTG 141656250
Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177
||||||||| |||| || | |||||||||| ||| || | |||||| | | || |
Sbjct 141656251 GAGATGGAAAACACAGGCTTTTACAGTGCCCAGATAGCCACAGAGACCTCTGAAAAGCTG 141656310
Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201
||||| ||||| |||||||| |||
Sbjct 141656311 TCCAGTTACACTCTGAGGATATTC 141656334
Score = 214 bits (236), Expect = 2e-50
Identities = 201/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265
|||||| |||||| || || | |||||||||||| || | ||||||| ||| ||| |||
Sbjct 139767477 AACTGAGGAACATACAAGTTACCAATCACAGTCAGCTATTTCAGAATAGGACCTGTGAGC 139767418
Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325
|||||||||| || ||||| |||||| | ||||||| |||| |||| |||||||||||
Sbjct 139767417 TCCATCTGACTTGCTCTGTGGAGGATGCAGATGACAATGTCTCATTCAGATGGGAGGCCT 139767358
Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385
|||| || || ||| | | |||| |||||||| ||||||||||||||||| ||
Sbjct 139767357 TGGGAAACACACTTTCAAGTCAGCCAAACCTCACTGTCTCCTGGGACCCCAGGATTTCCA 139767298
Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445
|||| ||| ||||||| ||||| || || || ||||| || ||| | || ||| | |||
Sbjct 139767297 GTGAACAGGACTACACCTGCATAGCAGAGAATGCTGTCAGTAATTTATCCTTCTCTCTCT 139767238
Query 2446 CGGCCCAGAAGCTGTG 2461
| ||||||||||| ||
Sbjct 139767237 CTGCCCAGAAGCTTTG 139767222
Score = 104 bits (114), Expect = 3e-17
Identities = 74/85 (87%), Gaps = 4/85 (5%)
Strand=Plus/Minus
Query 2661 CACCTCAGACCAAAACATGCTAAACATAACACACCAGCA----GACTGACTCTTTGATAA 2716
||| |||| ||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 139762573 CACTTCAGGCCAAAACATGCTAAAGATAACACACCAGCACATTGACTCTCTCTTTGATAA 139762514
Query 2717 ATAAGCTAATGGAATTATGGTTGAC 2741
||||| ||||||||||||||||||
Sbjct 139762513 CTAAGCAAATGGAATTATGGTTGAC 139762489
>seq7
Length=173848474
Score = 100 bits (110), Expect = 4e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | ||||||||||| ||||| ||||||||| || || | ||||
Sbjct 31998255 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCTTGTCCAGAAGGCACCACCACAGCT 31998314
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || | |||||| ||||| | || || | |||| || || |||
Sbjct 31998315 GCCCACTTCTGGAAGGTTCTATCTCCTGCTGGCCTGGTCTCCACAAGCTCAGTGTCCTGA 31998374
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
|||| || || || || || | ||| || | | | || || || || || || ||||
Sbjct 31998375 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 31998434
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 31998435 GCCCAGCACC 31998444
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 14520 GCAGCTTCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGT 14579
|| || |||||||| | || || || || || ||||| || | ||| ||||| || |
Sbjct 30334613 GCCGCCTCCCACTTGCGCTTGGTGATCTGAGCTGCCATGTCCGCCGCGGTCCAGGAGCTC 30334554
Query 14580 AGATCTTCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGA 14639
|| || || || ||| || ||||| || |||||||| |||| ||| ||||| || ||
Sbjct 30334553 AGGTCCTCGTTCAGAGCGATGTAATCCTTGCCGTCGTAGGCGTGCTGTTCATACCCGCGG 30334494
Query 14640 ATGAAACTTCCATTTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGA 14695
| ||| | || | || || || ||||||||||| ||| || ||||||||
Sbjct 30334493 AGGAAGCGCCCGTCGGGCCCCACGTCGCAGCCATACATCACCTGCATGGTGTGAGA 30334438
Score = 82.4 bits (90), Expect = 1e-10
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229
|||||| || ||||| || || | || |||||||| ||| ||||||||||| || |
Sbjct 31106171 CGGGTAGCCCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCA 31106112
Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289
| | |||| |||| || || || || ||||| || || || | || || | |||| |
Sbjct 31106111 CCACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCCACAAGCTCCG 31106052
Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349
| || || | || | ||||| || | | ||| || | | | || || || || || |
Sbjct 31106051 TGTCCTGGGTATGGCCCTCTCCATCCTGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGA 31105992
Query 14350 AACCCAAAGCCCAGCACC 14367
| |||| ||||||||||
Sbjct 31105991 AGCCCAGGGCCCAGCACC 31105974
>seq20
Length=64411610
Score = 82.4 bits (90), Expect = 1e-10
Identities = 133/188 (71%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 177663 AATCTAACCTACTCTACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAA 177722
|| || |||| ||| ||||||||||| |||||| ||| |||||||| || || ||
Sbjct 47999495 AACCTGACCTGCTCCACAAATGACACTGGAATCTCCATCCGTTGGTTCTTCAAAAACCAG 47999436
Query 177723 AATATATCATCATCACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGAC 177782
| | | | || || ||| || |||||| || || | | | |||||||| ||| ||
Sbjct 47999435 AGTCTCCCGTCCTCGGAGAGGATGAAGCTGTCCCAGGGCAACACCACCCTCAGCATAAAC 47999376
Query 177783 CCGGTC--GAGAGAGGAT-TTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATGT 177839
|| ||| ||| |||||| ||||||| || |||||||||| ||||| ||| |
Sbjct 47999375 CCTGTCAAGAGGGAGGATGCTGGGACG-TATTGGTGTGAGGTCTTCAACCCAATCAGTAA 47999317
Query 177840 AAACCAAA 177847
|||||||
Sbjct 47999316 GAACCAAA 47999309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629202384305040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |