Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq24 255 7e-63 seq1 147 3e-30 seq2 111 2e-19 seq9 102 1e-16 >seq24 Length=155392059 Score = 255 bits (282), Expect = 7e-63 Identities = 519/762 (68%), Gaps = 14/762 (2%) Strand=Plus/Plus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 |||||||| | ||||| || || |||| || || || || || ||||||| ||| Sbjct 44583481 ACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGT 44583535 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGATA 36993 || ||||| ||| |||| |||||||| | | || | | | | ||| | | Sbjct 44583536 GAAATATTCTCCGTAAAGTCAAATGGGCTC--TCTACTCCGAAAACCTTGCTAAAACCCA 44583593 Query 36994 ATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTA 37053 |||| || ||| || || || ||||| || ||||||| |||||| | || | Sbjct 44583594 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 44583653 Query 37054 TACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCAT 37113 | ||||| || || || || | || || || ||| || |||||| ||||||| Sbjct 44583654 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 44583713 Query 37114 CTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAAT 37172 ||| ||| | | || | || || | | ||| | | | | ||| |||| Sbjct 44583714 TGATAATTATTTCTCTCACTTTCTCCTCC-GATGGTTTGTGTACCAGGTGTTTGAACATC 44583772 Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||||||||| |||||||| |||||||| || || | |||||| ||||| || Sbjct 44583773 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44583832 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 | || ||||| | |||| ||| || | ||| ||||| | ||||||||| ||||||||| Sbjct 44583833 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 44583892 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || || ||||| ||||| || || ||||||| |||| ||| | || | | || Sbjct 44583893 AAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC 44583952 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||| | |||||||||| || ||||| || | |||||| || Sbjct 44583953 CCAATCCAGCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCG-TTCAATGGCA 44584011 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || |||||||| | ||||||| |||| | || ||||| ||||| || | ||||||| Sbjct 44584012 TTGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATAC 44584071 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 |||||||| || || ||||| || || || || || ||||| ||||| | ||||| | | Sbjct 44584072 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG-T 44584130 Query 37533 AAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 ||| ||||| | ||| | || | || |||||||| ||||| |||||||| || Sbjct 44584131 AATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGC 44584190 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||||||| | ||||||| |||||||| ||| || || Sbjct 44584191 TGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTC 44584232 Score = 145 bits (160), Expect = 9e-30 Identities = 313/460 (68%), Gaps = 11/460 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || | Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||| ||| || | ||| ||||| ||||||||| ||||||||||| Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAG--ACGTGTACCGAAAGTTGAAC---TATAAT 37350 | | ||| || ||||| ||| || | || || | | | ||| | | | Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 143817843 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | || |||| |||| ||||||| || ||||| || | |||||||| | Sbjct 143817842 CCCAA-TCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGCA-TCGTTTCAATGG 143817785 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | | |||||||| | |||||| ||||| | |||| || ||||| || | | ||| Sbjct 143817784 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATAT--GTGTCAATAAGGAGATTAT 143817727 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||||||| || || ||||| ||||| || || || ||||| || || | ||| | Sbjct 143817726 TTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 143817667 Query 37531 ATAATT-GAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 |||| |||| || | || ||| | | |||||||||| | ||||||||||| Sbjct 143817666 -TAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 143817608 Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTT 37629 |||||||| ||||| |||| || |||||||| ||||| Sbjct 143817607 GCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTT 143817568 >seq1 Length=229774977 Score = 147 bits (162), Expect = 3e-30 Identities = 237/337 (70%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347 |||| || ||| |||| ||||| ||||| ||||||| || | ||| | || | | Sbjct 140699552 AAAAAAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 140699611 Query 37348 AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAA 37407 || ||| || | | ||||| |||||| || ||||| | |||||||| Sbjct 140699612 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTTC---TTGACACA---AGGTGTTTCAA 140699665 Query 37408 TTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAAC 37467 | | || |||||||| | |||||| |||| |||| ||||| ||||| || | || Sbjct 140699666 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140699725 Query 37468 TATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTT 37527 ||||||||||||| || | ||||| || || || || || |||| ||||| | |||| Sbjct 140699726 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140699785 Query 37528 CAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 | | |||| ||||| || | ||| | || | ||||||||||| ||||| |||||| Sbjct 140699786 CTG-TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCA 140699844 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 || |||||||||||||| |||||| |||||||| Sbjct 140699845 CTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140699881 >seq2 Length=114371477 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||||||||| || | || ||||| | |||| ||| || Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | |||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10280333 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 10280332 ACAACACGT 10280324 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 10282562 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 10282504 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 10282503 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 10282470 >seq9 Length=144709823 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | ||||| ||||| || | ||||||||| | |||||| || | Sbjct 101030341 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 101030400 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || ||||| | Sbjct 101030401 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 101030460 Query 37318 CTAC 37321 | || Sbjct 101030461 CCAC 101030464 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCC 36880 |||||||||||||| |||| || || || |||| | | || || ||||||| | Sbjct 101019695 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTG-TGGTTTCTGC-CATAACTGC 101019752 Query 36881 CATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATAT 36940 | ||||| ||| ||||||| | || || |||||||| |||||||||| || || Sbjct 101019753 AAAACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAAT 101019812 Query 36941 ATTTTCCATAAAATCAAATGGATT 36964 ||||||||||||||||| ||||| Sbjct 101019813 GTTTTCCATAAAATCAAAAGGATT 101019836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592240731714960