Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq20 114 4e-21 >seq20 Length=64411610 Score = 114 bits (126), Expect = 4e-21 Identities = 192/273 (70%), Gaps = 11/273 (4%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| ||||||| ||||| || || || || || | Sbjct 58280982 TTCCTTCTGGATGTTATGG-AGAGTAGCTCCAAGGTCTGGCTTGGCTGCAAAACACTTTG 58281040 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 ||||||| || |||||||| | ||| ||| | ||| || || ||||||||||| | | Sbjct 58281041 TTGATGTAGGAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 58281100 Query 1078 TTAATTTTAGC-GATAAGCGTTT----TCATATTTCAAGAGGTGATAGGATTGCTCAGTT 1132 |||||||| || | || |||| ||| | || ||||||| | ||||| ||| | Sbjct 58281101 TTAATTTTTGCAAAGAAAAGTTTGAAGTCAAA----AAAAGGTGATCGAATTGCACAGCT 58281156 Query 1133 AATTTGTGAAAAGGCTGTTTT-TCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGG 1191 ||||||||| | | |||| |||| || || ||| | | || || || | Sbjct 58281157 CATTTGTGAACGGATTTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCA 58281216 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 |||||||||| | ||| ||||| |||||||||| Sbjct 58281217 AAAGGGGTTCAGGAGGTTTTGGCTCTACCGGAA 58281249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138664680324744