Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq9876 116 3e-21 seq18 104 2e-17 seq4 93.3 3e-14 seq8 87.8 1e-12 seq3 82.4 6e-11 >seq9876 Length=376000 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | ||| ||||| || ||||| || || ||||| || | Sbjct 278179 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 278120 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | | | | | |||| |||| ||||| |||||||| || | ||| || || | ||| Sbjct 278119 AGACTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGA 278060 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||||| ||||| || ||| |||| | |||| || | |||||| Sbjct 278059 TTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACT 278000 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| | |||||||| | ||||| || || |||||||| Sbjct 277999 TCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 277953 >seq18 Length=83442489 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || |||||||||||||| |||||||| |||||||| | | | ||| |||| Sbjct 46140290 AACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTATATCCATCT 46140349 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||| || ||||| ||| | || ||||| || ||||| ||||| ||||| Sbjct 46140350 TCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 46140409 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| || || | | ||| || | || ||| || Sbjct 46140410 TGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCAACCTTGAGGGTGGTTGTC 46140469 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| || || |||||||| Sbjct 46140470 TTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 46140501 >seq4 Length=205426864 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| | || ||| | || | || ||||| | |||| |||| || Sbjct 27700347 TGCAGGGTGGACTCTTTCCGGATGTTGCAGTCTGAGAGAGTTCGGCCATCCTCCAGCTGT 27700288 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||| ||||| | |||| || || || || || ||| ||| ||||||||||| Sbjct 27700287 TTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCTCCTTG-TCTTGAATTTTG 27700229 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | | || |||||||||| || ||||| || Sbjct 27700228 GCTTTCACATTCTCAATGGTGTCACTTGGCTTGACGTCAAGAGTGATGGTCTTGCCCGTG 27700169 Query 101447 AAAGTTTTTACAAATATCTGC 101467 | || || ||||| |||||| Sbjct 27700168 AGGGTCTTCACAAAGATCTGC 27700148 >seq8 Length=162613886 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||| | || ||||| || || ||| | || || ||| | | |||| |||| || Sbjct 25941854 TGCAGGATGGACTCTTTCTGGATGTTGCAGTCTAAGAGAGTGCGGCCATCCTCCAGCTGT 25941913 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||||||||| ||| || || || | |||||||| || || ||||||||||| Sbjct 25941914 TTGCCCGCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTTGAATTTTG 25941973 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || |||||| | || || || || |||| || ||||| || Sbjct 25941974 GCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTG 25942033 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 25942034 AGGGTCTTCACAAAGATCTGCAT 25942056 >seq3 Length=247869975 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/213 (68%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | ||| | | |||| |||| ||| Sbjct 140398425 TGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 140398484 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGC----------GGAATGCCTTCTTTATC 101376 || |||||||| || | | ||| || ||||| || ||||||||||||| Sbjct 140398485 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGCCTTCTTTATC 140398544 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 || || || || ||| |||| | |||||| | |||||||| || |||| || Sbjct 140398545 CTGGATCTTGGCCTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 140398604 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || || || || |||||||| Sbjct 140398605 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 140398637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396228780247818