Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq20 196 9e-45 seq24 125 1e-23 seq12 95.1 2e-14 seq1 93.3 8e-14 >seq20 Length=64411610 Score = 196 bits (216), Expect = 9e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 13098946 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 13098887 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 13098886 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 13098827 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 13098826 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 13098767 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 13098766 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 13098707 Query 241625 GAC 241627 ||| Sbjct 13098706 GAC 13098704 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 18729219 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 18729278 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | |||||| |||||||||||| ||||| |||| |||||| ||||| Sbjct 18729279 TCCGTGTTCTGACTCTTGAGGGTCTTCACTTTCTCTTCCAGGCGCGAGATGCGCTCCAGC 18729338 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 18729339 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 18729398 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 18729399 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 18729431 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | |||||| | ||||| ||||||| Sbjct 13098909 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGT 13098850 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 13098849 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 13098795 >seq24 Length=155392059 Score = 125 bits (138), Expect = 1e-23 Identities = 459/710 (65%), Gaps = 18/710 (3%) Strand=Plus/Plus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 |||| ||||||| ||| || ||| ||||| || ||||| ||| ||||| |||| Sbjct 44583621 ACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCT 44583680 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092 ||||| || || | |||||||| || || | | || | | || || Sbjct 44583681 CGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTTTCTCCT 44583740 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | || ||||||| |||||| ||| | | || ||| ||||| || | ||| || | Sbjct 44583741 CCGATGGTTTGTGTACCAGGTGTTTGA---ACATCAAGCAAGCAAAATCACAGTGTAAAC 44583797 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 | || || | ||| || || | ||||| || ||| |||||||| | || | | | Sbjct 44583798 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 44583857 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 |||||||||| || | || ||||| ||||| ||||||||||| || ||||| ||||| | Sbjct 44583858 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGG 44583917 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTG 48332 | | | || || | | ||| | ||||| |||||| | | ||||| |||| Sbjct 44583918 CTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACAAGGCCCAATCTG 44583977 Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG--CTTCTTGCACTCACC 48390 || |||||||| || |||||||| || ||||| |||||| ||| | || Sbjct 44583978 CCGCCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATTCCTTTTCT---T 44584033 Query 48391 TGCG-TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCT 48446 || | || | || || | | || || | ||||| ||||| || | || | Sbjct 44584034 TGGGATCTTTGATGTAAGTGTCAATAAGGAGACT---ATACATTTCAGAATGTATGTTTT 44584090 Query 48447 CTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGA 48506 | || || || ||||| || ||||| | ||| || | ||| ||| | | | Sbjct 44584091 CCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCTAA 44584150 Query 48507 ATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACAT 48566 ||| ||||| || ||| ||||| ||||| ||||| || |||||||| | || |||| Sbjct 44584151 ATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACAT 44584210 Query 48567 GTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT-CCAGCCCTGTACGTCTTTGCCC 48625 | | |||| | ||| | | || | | | ||| |||| | | | ||| ||| | Sbjct 44584211 GGGATATAAAATATCTCTCCTCG-GGCTTCGGGGATTCCCAGTGCCGAATGTCCTTGGAC 44584269 Query 48626 AGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 |||||||| || || ||||||||||| || || || || ||||| Sbjct 44584270 AGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44584319 >seq12 Length=134183262 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/104 (82%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 4096310 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 4096251 Query 213588 TTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGGG 213630 || |||| || | ||| |||| ||||||||||| || |||| Sbjct 4096250 TTGCTCTTT-CGATTACAGGAATCTTTGTAGAGCATATACGGGG 4096208 >seq1 Length=229774977 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 59748554 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 59748613 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 59748614 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 59748673 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 59748674 ATGGGGGAC 59748682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931413167900160