Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq20 196 9e-45
seq24 125 1e-23
seq12 95.1 2e-14
seq1 93.3 8e-14
>seq20
Length=64411610
Score = 196 bits (216), Expect = 9e-45
Identities = 189/243 (78%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||||||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 13098946 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 13098887
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | |||||| | ||||| || ||||| || | ||||||| ||||||
Sbjct 13098886 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 13098827
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 13098826 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 13098767
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| ||
Sbjct 13098766 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 13098707
Query 241625 GAC 241627
|||
Sbjct 13098706 GAC 13098704
Score = 145 bits (160), Expect = 1e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||| | ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 18729219 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 18729278
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | | |||||| |||||||||||| ||||| |||| |||||| |||||
Sbjct 18729279 TCCGTGTTCTGACTCTTGAGGGTCTTCACTTTCTCTTCCAGGCGCGAGATGCGCTCCAGC 18729338
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||||
Sbjct 18729339 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 18729398
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 18729399 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 18729431
Score = 89.7 bits (98), Expect = 1e-12
Identities = 88/115 (77%), Gaps = 8/115 (7%)
Strand=Plus/Minus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985
|||||||||| ||||||||| | ||||| || | | |||||| | ||||| |||||||
Sbjct 13098909 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGT 13098850
Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
| || | ||||||| | | |||||||| ||||||||||| ||||||||
Sbjct 13098849 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 13098795
>seq24
Length=155392059
Score = 125 bits (138), Expect = 1e-23
Identities = 459/710 (65%), Gaps = 18/710 (3%)
Strand=Plus/Plus
Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032
|||| ||||||| ||| || ||| ||||| || ||||| ||| ||||| ||||
Sbjct 44583621 ACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCT 44583680
Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092
||||| || || | |||||||| || || | | || | | || ||
Sbjct 44583681 CGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTTTCTCCT 44583740
Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152
| || ||||||| |||||| ||| | | || ||| ||||| || | ||| || |
Sbjct 44583741 CCGATGGTTTGTGTACCAGGTGTTTGA---ACATCAAGCAAGCAAAATCACAGTGTAAAC 44583797
Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212
| || || | ||| || || | ||||| || ||| |||||||| | || | | |
Sbjct 44583798 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 44583857
Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272
|||||||||| || | || ||||| ||||| ||||||||||| || ||||| ||||| |
Sbjct 44583858 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGG 44583917
Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTG 48332
| | | || || | | ||| | ||||| |||||| | | ||||| ||||
Sbjct 44583918 CTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACAAGGCCCAATCTG 44583977
Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG--CTTCTTGCACTCACC 48390
|| |||||||| || |||||||| || ||||| |||||| ||| | ||
Sbjct 44583978 CCGCCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATTCCTTTTCT---T 44584033
Query 48391 TGCG-TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCT 48446
|| | || | || || | | || || | ||||| ||||| || | || |
Sbjct 44584034 TGGGATCTTTGATGTAAGTGTCAATAAGGAGACT---ATACATTTCAGAATGTATGTTTT 44584090
Query 48447 CTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGA 48506
| || || || ||||| || ||||| | ||| || | ||| ||| | | |
Sbjct 44584091 CCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCTAA 44584150
Query 48507 ATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACAT 48566
||| ||||| || ||| ||||| ||||| ||||| || |||||||| | || ||||
Sbjct 44584151 ATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACAT 44584210
Query 48567 GTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT-CCAGCCCTGTACGTCTTTGCCC 48625
| | |||| | ||| | | || | | | ||| |||| | | | ||| ||| |
Sbjct 44584211 GGGATATAAAATATCTCTCCTCG-GGCTTCGGGGATTCCCAGTGCCGAATGTCCTTGGAC 44584269
Query 48626 AGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675
|||||||| || || ||||||||||| || || || || |||||
Sbjct 44584270 AGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44584319
>seq12
Length=134183262
Score = 95.1 bits (104), Expect = 2e-14
Identities = 85/104 (82%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| || || |||||||||||||||||| |||||| ||||||||||| |||
Sbjct 4096310 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 4096251
Query 213588 TTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGGG 213630
|| |||| || | ||| |||| ||||||||||| || ||||
Sbjct 4096250 TTGCTCTTT-CGATTACAGGAATCTTTGTAGAGCATATACGGGG 4096208
>seq1
Length=229774977
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 59748554 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 59748613
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 59748614 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 59748673
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 59748674 ATGGGGGAC 59748682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931413167900160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |