Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq24 127 4e-24 seq2 84.2 4e-11 >seq24 Length=155392059 Score = 127 bits (140), Expect = 4e-24 Identities = 408/617 (66%), Gaps = 36/617 (6%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| | || ||||||| |||| ||| | || Sbjct 44584331 GATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGAC 44584272 Query 25534 CTGGCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGC---ATTTTC 25588 ||| |||||||||| |||| ||| | | | | || |||| || ||||| Sbjct 44584271 CTGTCCAAGGACATT--CGGCACTGGGAATCCC---CGAAGCCCGAGGAGAGATATTTTA 44584217 Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 | | || ||| ||||||||||| |||||| ||||| || || ||| || | Sbjct 44584216 TATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGG 44584157 Query 25649 AGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || |||| | | ||| ||| ||| || ||| |||||||| || ||||| || Sbjct 44584156 AGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAAT 44584099 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTAC 25763 ||||| ||||| | || ||||| ||||| | || || || || ||||| | Sbjct 44584098 TGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATCAA 44584042 Query 25764 AGACGTCGCCGAGAGA--GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAG 25821 ||| || | ||| | || || || |||||| || | || || | ||||| Sbjct 44584041 AGA--TCCCAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAG 44583985 Query 25822 AGGAAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAG 25878 | | ||| |||||| || ||||| ||| |||| ||||| | ||| || Sbjct 44583984 AAGGCGGCAGATTGGGCCTTGTGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAA 44583928 Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || | |||||||| ||||| || || |||||||| || ||||| ||||| | || Sbjct 44583927 CGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATA 44583868 Query 25939 TTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 |||||||||||| | | | |||| ||||| || || |||||||| || || || || Sbjct 44583867 TTCTGGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAG 44583809 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 ||| || |||||| | ||| | |||||||| ||| || | | || ||| || | || Sbjct 44583808 CAGAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCA---AACACCTGGTACA 44583752 Query 26058 CAAACCTTCTCAAGAGA 26074 |||||| || | |||| Sbjct 44583751 CAAACCATCGGAGGAGA 44583735 >seq2 Length=114371477 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| ||||| || || |||||| |||||| | || |||||| Sbjct 10280331 GTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGG 10280390 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || ||||| || || || || ||||| || Sbjct 10280391 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 10280449 Query 26004 CGAGG 26008 |||| Sbjct 10280450 TGAGG 10280454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928725513106560