Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq24 127 4e-24
seq2 84.2 4e-11
>seq24
Length=155392059
Score = 127 bits (140), Expect = 4e-24
Identities = 408/617 (66%), Gaps = 36/617 (6%)
Strand=Plus/Minus
Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533
||||| ||| ||||||| |||||||| | || ||||||| |||| ||| | ||
Sbjct 44584331 GATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGAC 44584272
Query 25534 CTGGCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGC---ATTTTC 25588
||| |||||||||| |||| ||| | | | | || |||| || |||||
Sbjct 44584271 CTGTCCAAGGACATT--CGGCACTGGGAATCCC---CGAAGCCCGAGGAGAGATATTTTA 44584217
Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648
| | || ||| ||||||||||| |||||| ||||| || || ||| || |
Sbjct 44584216 TATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGG 44584157
Query 25649 AGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|| |||| | | ||| ||| ||| || ||| |||||||| || ||||| ||
Sbjct 44584156 AGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAAT 44584099
Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTAC 25763
||||| ||||| | || ||||| ||||| | || || || || ||||| |
Sbjct 44584098 TGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATCAA 44584042
Query 25764 AGACGTCGCCGAGAGA--GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAG 25821
||| || | ||| | || || || |||||| || | || || | |||||
Sbjct 44584041 AGA--TCCCAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAG 44583985
Query 25822 AGGAAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAG 25878
| | ||| |||||| || ||||| ||| |||| ||||| | ||| ||
Sbjct 44583984 AAGGCGGCAGATTGGGCCTTGTGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAA 44583928
Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938
|| | |||||||| ||||| || || |||||||| || ||||| ||||| | ||
Sbjct 44583927 CGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATA 44583868
Query 25939 TTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997
|||||||||||| | | | |||| ||||| || || |||||||| || || || ||
Sbjct 44583867 TTCTGGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAG 44583809
Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057
||| || |||||| | ||| | |||||||| ||| || | | || ||| || | ||
Sbjct 44583808 CAGAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCA---AACACCTGGTACA 44583752
Query 26058 CAAACCTTCTCAAGAGA 26074
|||||| || | ||||
Sbjct 44583751 CAAACCATCGGAGGAGA 44583735
>seq2
Length=114371477
Score = 84.2 bits (92), Expect = 4e-11
Identities = 95/125 (76%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944
|||||||||||||| ||||| ||||| || || |||||| |||||| | || ||||||
Sbjct 10280331 GTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGG 10280390
Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003
|||||| | | | |||| ||||| || || ||||| || || || || ||||| ||
Sbjct 10280391 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 10280449
Query 26004 CGAGG 26008
||||
Sbjct 10280450 TGAGG 10280454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928725513106560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |