Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq10 297 2e-75
seq4 165 9e-36
seq21 100 3e-16
seq6 96.9 4e-15
>seq10
Length=138149186
Score = 297 bits (328), Expect = 2e-75
Identities = 667/993 (67%), Gaps = 17/993 (2%)
Strand=Plus/Minus
Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106
|||| || ||| || |||| ||| |||| ||| || | |||||| || |||| || |||
Sbjct 75364627 TGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTA 75364568
Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166
|| || |||| ||||| || | || ||||||| || ||| || | ||||| | |
Sbjct 75364567 TTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAATG 75364511
Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226
|| || || || | || || || | ||| || ||||| |||| || || | || |||
Sbjct 75364510 CACACTGAGCGCACATGGACTCCATCGCAGGGAGGGTAGGGAGCACCCTTGGAAACATCA 75364451
Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286
|| || ||||||||||||| ||||||||||| | || |||||||| || || ||
Sbjct 75364450 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCATAC 75364391
Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
|| | | ||| | || |||||| | | || || | || | ||||||||| |
Sbjct 75364390 TTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTTTGGATGGTGGCCCAGA 75364333
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404
| | || || |||||||| ||||| | | ||| ||||| |||| | |||| |
Sbjct 75364332 GATACTCATCAGGGCTGTATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCAT 75364273
Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464
| | || || | || || || | || || ||||| || ||||| || || |
Sbjct 75364272 TCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAAAA 75364213
Query 160465 TCGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521
||| | | || ||| || | |||| | || ||||| | || | ||| |
Sbjct 75364212 GAGGTGTTTCGAGTGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCAT 75364156
Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581
| || | | | | |||||||||||||| | || || | |||||| | ||||| |
Sbjct 75364155 TAACGACCTCATACCGCTTCTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTT 75364096
Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641
| || |||| | || | | | || |||| | |||| || |||||||| || || |
Sbjct 75364095 CCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 75364036
Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701
||||| || |||| || | ||||||| ||||||||| || || |||| | | |
Sbjct 75364035 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATCGCATAGA 75363976
Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761
| ||| ||||||| || | || ||||| || |||||||| || || || || || |||
Sbjct 75363975 GATCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 75363916
Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG-- 160819
| | | |||||||||||||| ||| ||||| || |||| |||| ||| | |||
Sbjct 75363915 CCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTG-CAGCT 75363857
Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879
||| | | | || | ||| |||||| || | ||| || | ||||||||| ||
Sbjct 75363856 AAATAGGA-ATCCTCGGATTTTGTGTCCACATGAATGCAGTAGAAATTCTGAGGCATATA 75363798
Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939
||||||||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||
Sbjct 75363797 GATGGCCCTCAGCAGCCTGTCAAGCATGTCAATCTTGTGATGAACCACTATAGAATATGC 75363738
Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999
||| |||||||| | ||| || ||| |||| | | || || || |||||||
Sbjct 75363737 TATTGGAAACTCCGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGAT 75363678
Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032
||| || ||| || | |||||||| |||||
Sbjct 75363677 GAAAGAAGAACAGTCACTGGTCATGTTTATATA 75363645
>seq4
Length=205426864
Score = 165 bits (182), Expect = 9e-36
Identities = 219/304 (72%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 168169 TTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCT 168228
|||| || ||||| || | || || || |||||||| |||||| | || ||||| ||||
Sbjct 116416796 TTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGACACATGTAACACCCTTCATCCT 116416737
Query 168229 CCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCA 168288
||| |||| ||||||| || || | ||||||||| |||| |||| ||| || ||||| |
Sbjct 116416736 CCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAGTCCCAGCTGGGTAATGTTTA 116416677
Query 168289 CACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGT 168348
|| ||||| | ||| || | || || || |||||||||||||||||| ||||||
Sbjct 116416676 TCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTTCTCGCTGAAGGTGACCATGT 116416617
Query 168349 TCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCT 168408
| || ||||| || || | |||||||| || || || || | || | | | |
Sbjct 116416616 TTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATGAGGGCTTCCTGGGCATTTT 116416557
Query 168409 GCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGA 168468
|||| || ||| | | ||||| || |||| |||| | |||| ||||| || || || |
Sbjct 116416556 GCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCTCTCTTTCATCCTGGGTCACCA 116416497
Query 168469 CCTG 168472
| ||
Sbjct 116416496 CTTG 116416493
Score = 84.2 bits (92), Expect = 3e-11
Identities = 151/220 (69%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942
|||||| | ||| || ||||| |||| || || |||| ||| |||||||| ||
Sbjct 116419344 GTTTGCTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 116419288
Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002
|| || ||| |||| || ||||| | || | ||||| || ||| || || |||||
Sbjct 116419287 CCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCATTT 116419228
Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062
| || | | || || || || ||||||||||| | | ||||||||||| |
Sbjct 116419227 GGGTGAGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGACC 116419168
Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
| || || || || || || |||||||| || |||||||
Sbjct 116419167 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 116419128
>seq21
Length=62195757
Score = 100 bits (110), Expect = 3e-16
Identities = 235/347 (68%), Gaps = 12/347 (3%)
Strand=Plus/Plus
Query 160608 TTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTT 160667
|| |||| | |||| || | |||||| || || | ||||| || ||| || | | |
Sbjct 18354339 TTGAGCTTCCTGACAATTT-TAGGTTGGTTTTAATAGGAAAATCCATACTACAAACATGT 18354397
Query 160668 ATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCTCATGCAATTAATATCTG 160725
|| | |||| |||| | || |||| |||||| |||||||||||| || | || |
Sbjct 18354398 ATTAAGTACGTCCAGTCTGCACTCACT--GTGCAGAGGTCCCTCATGCAGTTGAGGTCAG 18354455
Query 160726 CCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGT 160785
|| | || || ||||| | || || || | |||| | | || ||||||||||| ||
Sbjct 18354456 CCAGAACCCGACTCCACAAGGCATAAACCAGACTCTCCAACTGACAGGCCACAAAGATGT 18354515
Query 160786 TATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACATCTTATCCGCCTTTC 160842
| ||| | ||||| || || ||| || || | |||| | |||| | |||
Sbjct 18354516 TGCTGAA--ATGACACTATGCCCATCACTACAGCTAAAAAGGA-ATCTGCT-GATTTTTT 18354571
Query 160843 GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGA 160902
|||||| || | |||||| | ||||||||| |||||||| || | | ||| || |
Sbjct 18354572 TGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCTCTCTGGAGCCTGTCAA 18354631
Query 160903 ACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949
||| || | |||| ||| | || ||||| || ||||| ||||||
Sbjct 18354632 GCATTTCAGTTTTATAATGAACCAGTATAGAATATGCTATTGGAAAC 18354678
>seq6
Length=183735486
Score = 96.9 bits (106), Expect = 4e-15
Identities = 235/353 (67%), Gaps = 10/353 (3%)
Strand=Plus/Minus
Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106
|||| |||||| || | || |||||||| ||| || | ||| ||| ||| | |||
Sbjct 93328422 TGTCTCAGATGATCATTCAAACATTGGATGGCAAAGAGGTC---GTCGATGTCAAGCTTA 93328366
Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166
|| || |||| ||||| | | || ||||| | || ||| || | | ||| | |
Sbjct 93328365 TTGGCAAACAAGTGGTGCTTGCAC---AGCATCCATTTCAAGTCACCAGCTCTGAAAATG 93328309
Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226
|| || | | | ||| | || | | | || ||||| |||| || | | || |||
Sbjct 93328308 CACACCAAGTGCACGTGGTCCCCATCGTAGGGTGGGTAGGGAGCACCCTCGGAAACATCA 93328249
Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286
|| || ||||||||||||| ||||||||||| | || ||| |||| || ||| ||
Sbjct 93328248 CCCTCCAAGTACTGCCACTTGACAAACCTGGCGACTGCATGCGTGTCAGACAAGTCATAC 93328189
Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
|| | | ||| | | | ||||| || | || |||| ||| | |||||| || |
Sbjct 93328188 TTATGGCTTGCAGAG--AGTGAGCCGGGGACTTCAGGAATACCCTGGATGGTGGCTCAGA 93328131
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATT 160397
| || || || |||||||| ||||| | | || ||||| |||| | ||||
Sbjct 93328130 GATGCTCATCAGGGCTGTATGTGTCTTGCGCTCACTCCATAAACTTTTGGATT 93328078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577145070624240
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