Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq10 297 2e-75 seq4 165 9e-36 seq21 100 3e-16 seq6 96.9 4e-15 >seq10 Length=138149186 Score = 297 bits (328), Expect = 2e-75 Identities = 667/993 (67%), Gaps = 17/993 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| || ||| || |||| ||| |||| ||| || | |||||| || |||| || ||| Sbjct 75364627 TGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTA 75364568 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| || | || ||||||| || ||| || | ||||| | | Sbjct 75364567 TTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAATG 75364511 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | || || || | ||| || ||||| |||| || || | || ||| Sbjct 75364510 CACACTGAGCGCACATGGACTCCATCGCAGGGAGGGTAGGGAGCACCCTTGGAAACATCA 75364451 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || |||||||| || || || Sbjct 75364450 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCATAC 75364391 Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 || | | ||| | || |||||| | | || || | || | ||||||||| | Sbjct 75364390 TTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTTTGGATGGTGGCCCAGA 75364333 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 | | || || |||||||| ||||| | | ||| ||||| |||| | |||| | Sbjct 75364332 GATACTCATCAGGGCTGTATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCAT 75364273 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | | || || | || || || | || || ||||| || ||||| || || | Sbjct 75364272 TCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAAAA 75364213 Query 160465 TCGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 ||| | | || ||| || | |||| | || ||||| | || | ||| | Sbjct 75364212 GAGGTGTTTCGAGTGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCAT 75364156 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 | || | | | | |||||||||||||| | || || | |||||| | ||||| | Sbjct 75364155 TAACGACCTCATACCGCTTCTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTT 75364096 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | || |||| | || | | | || |||| | |||| || |||||||| || || | Sbjct 75364095 CCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 75364036 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 ||||| || |||| || | ||||||| ||||||||| || || |||| | | | Sbjct 75364035 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATCGCATAGA 75363976 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 | ||| ||||||| || | || ||||| || |||||||| || || || || || ||| Sbjct 75363975 GATCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 75363916 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG-- 160819 | | | |||||||||||||| ||| ||||| || |||| |||| ||| | ||| Sbjct 75363915 CCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTG-CAGCT 75363857 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 ||| | | | || | ||| |||||| || | ||| || | ||||||||| || Sbjct 75363856 AAATAGGA-ATCCTCGGATTTTGTGTCCACATGAATGCAGTAGAAATTCTGAGGCATATA 75363798 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||||||||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || || Sbjct 75363797 GATGGCCCTCAGCAGCCTGTCAAGCATGTCAATCTTGTGATGAACCACTATAGAATATGC 75363738 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 ||| |||||||| | ||| || ||| |||| | | || || || ||||||| Sbjct 75363737 TATTGGAAACTCCGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGAT 75363678 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| || ||| || | |||||||| ||||| Sbjct 75363677 GAAAGAAGAACAGTCACTGGTCATGTTTATATA 75363645 >seq4 Length=205426864 Score = 165 bits (182), Expect = 9e-36 Identities = 219/304 (72%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 168169 TTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCT 168228 |||| || ||||| || | || || || |||||||| |||||| | || ||||| |||| Sbjct 116416796 TTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGACACATGTAACACCCTTCATCCT 116416737 Query 168229 CCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCA 168288 ||| |||| ||||||| || || | ||||||||| |||| |||| ||| || ||||| | Sbjct 116416736 CCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAGTCCCAGCTGGGTAATGTTTA 116416677 Query 168289 CACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGT 168348 || ||||| | ||| || | || || || |||||||||||||||||| |||||| Sbjct 116416676 TCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTTCTCGCTGAAGGTGACCATGT 116416617 Query 168349 TCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCT 168408 | || ||||| || || | |||||||| || || || || | || | | | | Sbjct 116416616 TTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATGAGGGCTTCCTGGGCATTTT 116416557 Query 168409 GCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGA 168468 |||| || ||| | | ||||| || |||| |||| | |||| ||||| || || || | Sbjct 116416556 GCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCTCTCTTTCATCCTGGGTCACCA 116416497 Query 168469 CCTG 168472 | || Sbjct 116416496 CTTG 116416493 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 116419344 GTTTGCTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 116419288 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| | || | ||||| || ||| || || ||||| Sbjct 116419287 CCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCATTT 116419228 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || ||||||||||| | | ||||||||||| | Sbjct 116419227 GGGTGAGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGACC 116419168 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || ||||||| Sbjct 116419167 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 116419128 >seq21 Length=62195757 Score = 100 bits (110), Expect = 3e-16 Identities = 235/347 (68%), Gaps = 12/347 (3%) Strand=Plus/Plus Query 160608 TTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTT 160667 || |||| | |||| || | |||||| || || | ||||| || ||| || | | | Sbjct 18354339 TTGAGCTTCCTGACAATTT-TAGGTTGGTTTTAATAGGAAAATCCATACTACAAACATGT 18354397 Query 160668 ATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCTCATGCAATTAATATCTG 160725 || | |||| |||| | || |||| |||||| |||||||||||| || | || | Sbjct 18354398 ATTAAGTACGTCCAGTCTGCACTCACT--GTGCAGAGGTCCCTCATGCAGTTGAGGTCAG 18354455 Query 160726 CCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGT 160785 || | || || ||||| | || || || | |||| | | || ||||||||||| || Sbjct 18354456 CCAGAACCCGACTCCACAAGGCATAAACCAGACTCTCCAACTGACAGGCCACAAAGATGT 18354515 Query 160786 TATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACATCTTATCCGCCTTTC 160842 | ||| | ||||| || || ||| || || | |||| | |||| | ||| Sbjct 18354516 TGCTGAA--ATGACACTATGCCCATCACTACAGCTAAAAAGGA-ATCTGCT-GATTTTTT 18354571 Query 160843 GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGA 160902 |||||| || | |||||| | ||||||||| |||||||| || | | ||| || | Sbjct 18354572 TGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCTCTCTGGAGCCTGTCAA 18354631 Query 160903 ACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949 ||| || | |||| ||| | || ||||| || ||||| |||||| Sbjct 18354632 GCATTTCAGTTTTATAATGAACCAGTATAGAATATGCTATTGGAAAC 18354678 >seq6 Length=183735486 Score = 96.9 bits (106), Expect = 4e-15 Identities = 235/353 (67%), Gaps = 10/353 (3%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || | || |||||||| ||| || | ||| ||| ||| | ||| Sbjct 93328422 TGTCTCAGATGATCATTCAAACATTGGATGGCAAAGAGGTC---GTCGATGTCAAGCTTA 93328366 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| | | || ||||| | || ||| || | | ||| | | Sbjct 93328365 TTGGCAAACAAGTGGTGCTTGCAC---AGCATCCATTTCAAGTCACCAGCTCTGAAAATG 93328309 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || | | | ||| | || | | | || ||||| |||| || | | || ||| Sbjct 93328308 CACACCAAGTGCACGTGGTCCCCATCGTAGGGTGGGTAGGGAGCACCCTCGGAAACATCA 93328249 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || ||| |||| || ||| || Sbjct 93328248 CCCTCCAAGTACTGCCACTTGACAAACCTGGCGACTGCATGCGTGTCAGACAAGTCATAC 93328189 Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 || | | ||| | | | ||||| || | || |||| ||| | |||||| || | Sbjct 93328188 TTATGGCTTGCAGAG--AGTGAGCCGGGGACTTCAGGAATACCCTGGATGGTGGCTCAGA 93328131 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATT 160397 | || || || |||||||| ||||| | | || ||||| |||| | |||| Sbjct 93328130 GATGCTCATCAGGGCTGTATGTGTCTTGCGCTCACTCCATAAACTTTTGGATT 93328078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577145070624240