Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq17 116 7e-21 seq13 116 7e-21 seq21 100 5e-16 seq7 98.7 2e-15 seq24 93.3 8e-14 seq18 93.3 8e-14 seq9876 91.5 3e-13 seq8 84.2 4e-11 >seq17 Length=90481686 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||||| ||||| || || || | ||| || Sbjct 60459967 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 60460026 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 60460027 AGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 60460086 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 60460087 ATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 60460146 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || |||||||| Sbjct 60460147 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178 >seq13 Length=135337776 Score = 116 bits (128), Expect = 7e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| | || || ||||| ||||| || | |||||| || || Sbjct 126789522 ATTTGCATCCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTG 126789581 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | | ||| || | |||||||||||||| || || ||||| || Sbjct 126789582 TAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGG 126789641 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| |||||||| || || | || | ||| || || || Sbjct 126789642 TCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTG 126789701 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | |||||| || || || || || ||||| || || || || ||||| || |||||| Sbjct 126789702 GGCTCAACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCATT 126789758 >seq21 Length=62195757 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 ||||| || | ||| | ||||||||||| |||||||| ||||| || | |||| ||| Sbjct 17453458 GCAAAGATCAGTCTTTACTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTT 17453399 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 |||||| || ||||| || | ||||| || || || || || || ||||| || ||| Sbjct 17453398 ATATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTT 17453339 Query 193344 TTTACAAATATTTGCATTTT 193363 || ||||| || |||||||| Sbjct 17453338 TTCACAAAAATCTGCATTTT 17453319 >seq7 Length=173848474 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||| | ||||| || || || | ||| || Sbjct 115442955 ACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGACAAAGTACATCCATCTTCC 115442896 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| ||||| ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 115442895 AGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 115442836 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| | | ||| | || || || || || || Sbjct 115442835 ATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGCCTCGAGGGTGATGGTCTTC 115442776 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | | || ||||| || || || |||||||| Sbjct 115442775 TCCATAAGGGTTTTCACGAAAATCTGCATTTT 115442744 >seq24 Length=155392059 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193155 AGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAAT 193214 ||||| | |||| ||| || ||| || |||| || || || | ||| || | | Sbjct 3658026 AGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGT 3657967 Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | ||| || ||||||||||| ||||| || ||||| || || Sbjct 3657966 TGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTTATCCTGGATC 3657907 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| |||| || | ||| || | ||||| || || || || || || || Sbjct 3657906 TTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCC 3657847 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||| ||||| || || || |||| ||| Sbjct 3657846 CTTAGGGTTTTCACGAAAATCTGCAGTTT 3657818 >seq18 Length=83442489 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | || || | || | ||| | |||| |||||| |||||| ||| | || Sbjct 46140274 ACCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGA 46140333 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || ||| || | ||| || || ||||| || ||| || ||||||||||| Sbjct 46140334 CAAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 46140393 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| ||||| || || |||| |||| |||| || ||||| | | ||||| Sbjct 46140394 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCAAC 46140453 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || || | || || || || || ||||| || || || |||||||| Sbjct 46140454 CTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46140504 >seq9876 Length=376000 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||||||||| || | |||||| || || ||||| Sbjct 278182 ATACCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCA 278123 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | | | ||| || | || || || ||||| || | |||| || ||| | Sbjct 278122 GAAAGACTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGG 278063 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || | |||||||||||||| ||||||| || | |||| ||||| | | ||| Sbjct 278062 GGATTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCC 278003 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || | || || || || ||||| || || || |||||||| Sbjct 278002 ACTTCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 277950 >seq8 Length=162613886 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | ||| || ||||||||||| |||||||| || Sbjct 160503402 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 160503343 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| || |||| | | ||||| | || || || Sbjct 160503342 ATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAACCTTGAGGGTGAT 160503283 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||||| | || |||||||| Sbjct 160503282 GGTCTTCCCCGTAAGGGTTTTTATGGAAATCTGCATTTT 160503244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899538861883680