Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq24 147 3e-30 seq1 91.5 2e-13 >seq24 Length=155392059 Score = 147 bits (162), Expect = 3e-30 Identities = 300/443 (68%), Gaps = 9/443 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || ||||||||| ||||||||| ||||||||| || | ||| || |||||| Sbjct 44583773 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44583832 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| | |||| ||| || ||||| ||||||||||| ||| || ||||||| Sbjct 44583833 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 44583892 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 || || || || || ||| ||||| |||| | | |||| || | | | ||| Sbjct 44583893 AAGATGCCTTCTACTGCA-GCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTC 44583951 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | ||||| ||||| ||| | | ||| || || | || || || Sbjct 44583952 CCCAATCCAGCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCAT-CGTTCAATGGC 44584010 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| || | | || |||||||||| |||||| || |||||||| || | | | ||| Sbjct 44584011 ATTGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 44584070 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||||||||| ||||||| || || || || | ||| || | | || || | Sbjct 44584071 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 44584130 Query 18514 ATATTGA---ATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 | ||| || | ||| ||||| || |||||||| ||||| ||||| || ||| Sbjct 44584131 AATCTGAACTATTTGGCT---AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACT 44584187 Query 18571 AGATGCGAAAAATGCCAAAACAT 18593 | ||| || || ||| ||||| Sbjct 44584188 TGCTGCAAAGAAAACCAGAACAT 44584210 >seq1 Length=229774977 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||||||||||||||| |||||||| || | | | |||||||||||||||| || Sbjct 140699687 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 140699746 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGC 18527 ||||||| || || || || ||| || | | || || | | |||| || | || Sbjct 140699747 TTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 140699806 Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587 | ||||| || ||||| || ||||| ||||| || ||| | ||| || || |||| Sbjct 140699807 T---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 140699863 Query 18588 AAACA 18592 |||| Sbjct 140699864 GAACA 140699868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731778009338400