Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq17 136 8e-27
seq24 116 7e-21
seq7 109 1e-18
seq21 102 2e-16
seq8 102 2e-16
seq18 96.9 7e-15
seq3 91.5 3e-13
seq13 84.2 4e-11
>seq17
Length=90481686
Score = 136 bits (150), Expect = 8e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || ||||
Sbjct 60459948 ACCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 60460006
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| || || ||||||||||| | |||||| |||||||| |
Sbjct 60460007 ACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 60460066
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| || | ||| |
Sbjct 60460067 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 60460126
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || || || | ||||| | || |||||||||||
Sbjct 60460127 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178
>seq24
Length=155392059
Score = 116 bits (128), Expect = 7e-21
Identities = 152/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391
||| | ||||| ||| ||| || || || | ||||| || || ||| |||| |||| ||
Sbjct 3658024 ATGAAGAGTAGGCTCCTTTTGA-ATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTT 3657966
Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451
| || ||||||||||| | ||| || |||||||| || ||||| || ||||| || || |
Sbjct 3657965 GCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTTATCCTGGATCT 3657906
Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511
| |||||||| ||| | |||||| | ||| || || || || ||||| || ||
Sbjct 3657905 TGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCC 3657846
Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539
||| ||||| | || ||||||| |||
Sbjct 3657845 TTAGGGTTTTCACGAAAATCTGCAGTTT 3657818
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877
|| || || ||||||||| ||||||||||| || || |||| |||||| |||
Sbjct 44583770 ATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 44583829
Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937
|| | || ||||| | ||||| || || ||||| ||||| ||||||||| || ||||
Sbjct 44583830 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 44583889
Query 49938 AAGAATATACCCTCGAC 49954
||||| || || || ||
Sbjct 44583890 AAGAAGATGCCTTCTAC 44583906
>seq7
Length=173848474
Score = 109 bits (120), Expect = 1e-18
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || ||| | || ||||
Sbjct 115442974 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAG 115442916
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || | | |||| |||| ||| || ||||||||||| | ||| || |||||||| |
Sbjct 115442915 ACAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 115442856
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| | | |||
Sbjct 115442855 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAG 115442796
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || | | | ||||| | || |||||||||||
Sbjct 115442795 CCTCGAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 115442744
>seq21
Length=62195757
Score = 102 bits (112), Expect = 2e-16
Identities = 164/232 (71%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || || || || ||||
Sbjct 17453548 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 17453490
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || | | | |||| |||| || || | ||||||||| | ||| | |||||||| |
Sbjct 17453489 ACAAAGCACATCCATCCTCCAGTTCTTG-CTAGCAAAGATCAGTCTTTACTGATCAGGAG 17453431
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || | || |||| ||| ||| | ||| || | ||| |
Sbjct 17453430 GAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATCGTATCCGAGGGTTCAA 17453371
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || || || | ||||| | ||| |||||||||||
Sbjct 17453370 CCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 17453319
>seq8
Length=162613886
Score = 102 bits (112), Expect = 2e-16
Identities = 164/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | |||| ||| ||| || || || || ||||
Sbjct 160503472 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGA-ATGTTGTAGTCAG 160503414
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| | || | | |||| |||| ||| || ||||||||||| | ||| || |||||||| |
Sbjct 160503413 ACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 160503356
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| ||| | | ||| |
Sbjct 160503355 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAA 160503296
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| | || || ||||| || || || | ||||| || | |||||||||||
Sbjct 160503295 CCTTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTTATGGAAATCTGCATTTT 160503244
>seq18
Length=83442489
Score = 96.9 bits (106), Expect = 7e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | || | || || ||||| | |||| |||||| ||||| || ||||
Sbjct 46140274 ACCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGA 46140333
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || | |||| |||| ||| || ||||||||||| ||| || |||||||| ||
Sbjct 46140334 CAAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 46140393
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||||| ||| | ||| | | ||| ||
Sbjct 46140394 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCAAC 46140453
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || | || || || || | ||||| | || |||||||||||
Sbjct 46140454 CTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46140504
>seq3
Length=247869975
Score = 91.5 bits (100), Expect = 3e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| |||| ||| || |||||||||| | ||| || | | |||| | ||||||| |
Sbjct 230111690 CATCTTCCAGTTGCTTGTCAGCAAAGATAAGTCTTTGCTAACCAGGAAGATTTCCTTCCT 230111631
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
|||| || || || |||||||| ||| | |||||| | ||| || || || || |
Sbjct 230111630 TATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAAGTTTCAACCTCCAGGGTGA 230111571
Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|||| || | || | ||||| ||||| |||||||||||
Sbjct 230111570 TGGTCTTCTCTGTAAGAGTTTTTATAAAAATCTGCATTTT 230111531
>seq13
Length=135337776
Score = 84.2 bits (92), Expect = 4e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387
|| || || | ||| | |||||| ||| || || ||||| | || ||| |||| |||
Sbjct 126789321 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 126789380
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
| ||||| ||||||||||| || ||||| || ||||| || || ||||| || |||||
Sbjct 126789381 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 126789440
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
|| || ||| || || || | || | || || || || || ||||| ||
Sbjct 126789441 ATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 126789500
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | ||| || | || || |||||
Sbjct 126789501 CCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984350407359900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |