Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq17 136 8e-27 seq24 116 7e-21 seq7 109 1e-18 seq21 102 2e-16 seq8 102 2e-16 seq18 96.9 7e-15 seq3 91.5 3e-13 seq13 84.2 4e-11 >seq17 Length=90481686 Score = 136 bits (150), Expect = 8e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 60459948 ACCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 60460006 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| || || ||||||||||| | |||||| |||||||| | Sbjct 60460007 ACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 60460066 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| | Sbjct 60460067 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 60460126 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 60460127 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178 >seq24 Length=155392059 Score = 116 bits (128), Expect = 7e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || || || | ||||| || || ||| |||| |||| || Sbjct 3658024 ATGAAGAGTAGGCTCCTTTTGA-ATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTT 3657966 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | || ||||||||||| | ||| || |||||||| || ||||| || ||||| || || | Sbjct 3657965 GCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTTATCCTGGATCT 3657906 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| ||| | |||||| | ||| || || || || ||||| || || Sbjct 3657905 TGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCC 3657846 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 ||| ||||| | || ||||||| ||| Sbjct 3657845 TTAGGGTTTTCACGAAAATCTGCAGTTT 3657818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877 || || || ||||||||| ||||||||||| || || |||| |||||| ||| Sbjct 44583770 ATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 44583829 Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937 || | || ||||| | ||||| || || ||||| ||||| ||||||||| || |||| Sbjct 44583830 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 44583889 Query 49938 AAGAATATACCCTCGAC 49954 ||||| || || || || Sbjct 44583890 AAGAAGATGCCTTCTAC 44583906 >seq7 Length=173848474 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||| | || |||| Sbjct 115442974 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAG 115442916 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | | |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 115442915 ACAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 115442856 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| | | ||| Sbjct 115442855 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAG 115442796 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || | | | ||||| | || ||||||||||| Sbjct 115442795 CCTCGAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 115442744 >seq21 Length=62195757 Score = 102 bits (112), Expect = 2e-16 Identities = 164/232 (71%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || || || || |||| Sbjct 17453548 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 17453490 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || | | | |||| |||| || || | ||||||||| | ||| | |||||||| | Sbjct 17453489 ACAAAGCACATCCATCCTCCAGTTCTTG-CTAGCAAAGATCAGTCTTTACTGATCAGGAG 17453431 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || | || |||| ||| ||| | ||| || | ||| | Sbjct 17453430 GAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATCGTATCCGAGGGTTCAA 17453371 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 17453370 CCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 17453319 >seq8 Length=162613886 Score = 102 bits (112), Expect = 2e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | |||| ||| ||| || || || || |||| Sbjct 160503472 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGA-ATGTTGTAGTCAG 160503414 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || | | |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 160503413 ACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 160503356 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| ||| | | ||| | Sbjct 160503355 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAA 160503296 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | | || || ||||| || || || | ||||| || | ||||||||||| Sbjct 160503295 CCTTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTTATGGAAATCTGCATTTT 160503244 >seq18 Length=83442489 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | || | || || ||||| | |||| |||||| ||||| || |||| Sbjct 46140274 ACCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGA 46140333 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | |||| |||| ||| || ||||||||||| ||| || |||||||| || Sbjct 46140334 CAAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 46140393 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| ||| | ||| | | ||| || Sbjct 46140394 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCAAC 46140453 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || | || || || || | ||||| | || ||||||||||| Sbjct 46140454 CTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46140504 >seq3 Length=247869975 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || |||||||||| | ||| || | | |||| | ||||||| | Sbjct 230111690 CATCTTCCAGTTGCTTGTCAGCAAAGATAAGTCTTTGCTAACCAGGAAGATTTCCTTCCT 230111631 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || |||||||| ||| | |||||| | ||| || || || || | Sbjct 230111630 TATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAAGTTTCAACCTCCAGGGTGA 230111571 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| || | || | ||||| ||||| ||||||||||| Sbjct 230111570 TGGTCTTCTCTGTAAGAGTTTTTATAAAAATCTGCATTTT 230111531 >seq13 Length=135337776 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || | ||| | |||||| ||| || || ||||| | || ||| |||| ||| Sbjct 126789321 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 126789380 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | ||||| ||||||||||| || ||||| || ||||| || || ||||| || ||||| Sbjct 126789381 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 126789440 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || ||| || || || | || | || || || || || ||||| || Sbjct 126789441 ATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 126789500 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || | || || ||||| Sbjct 126789501 CCAGTGAGTGTCTTCACGAAGATTTGCAT 126789529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984350407359900