Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq17 136 7e-27 seq18 111 3e-19 seq7 105 1e-17 seq21 96.9 6e-15 seq8 96.9 6e-15 seq6 95.1 2e-14 >seq17 Length=90481686 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 60459939 TTTCTTAGCACCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 60459998 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| || || |||||||| || | |||||| || Sbjct 60459999 GTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTG 60460058 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 60460059 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 60460118 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 60460119 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178 >seq18 Length=83442489 Score = 111 bits (122), Expect = 3e-19 Identities = 168/226 (74%), Gaps = 15/226 (7%) Strand=Plus/Plus Query 167229 TATATAGTAATAAGTTATATATATTCCTGATGTATACTT-TATATTA-AAGTTATTT-TG 167285 |||||| | ||| ||||||||||| | || |||| || ||||||| | |||||| | Sbjct 64072901 TATATAATTATATATTATATATATTATTTATATATAATTATATATTATATATTATTTATA 64072960 Query 167286 TTCataattaattaacat-gatattatttgtatataatt-tatatgaattacgaata-tt 167342 | ||||||| || || ||||||||| ||||||||| ||||| | || | || || Sbjct 64072961 TATATAATTATATATTATATATATTATTTATATATAATTATATATTATATA-TATTATTT 64073019 Query 167343 atataattttaatgatctattatatatattataaatggccgaattttttatataataaat 167402 |||||||| | || || |||||||||||||||| || |||| | ||||||| | | Sbjct 64073020 ATATAATTAT-ATTATATATTATATATATTATATAT-----AATTATATATATAAATATT 64073073 Query 167403 agttttat-tataacaaaatattggatatt-ttgataaataattat 167446 | || ||| ||||| | ||||| ||||| || ||| |||||||| Sbjct 64073074 ATTTATATATATAATTATATATTATATATTATTTATATATAATTAT 64073119 Score = 100 bits (110), Expect = 5e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | |||| || || ||||| | |||| |||||| |||||| Sbjct 46140265 TTTCTTAGCACCACCACGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATT 46140324 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || | || |||| | | || |||| ||| || |||||||| || ||| || || Sbjct 46140325 GTAGCCAGACAAAGTATATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTG 46140384 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| | Sbjct 46140385 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAA 46140444 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || | || || | || || || || | ||||| | ||| ||||||||||| Sbjct 46140445 TGGTTCAACCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46140504 Score = 86.0 bits (94), Expect = 1e-11 Identities = 163/230 (71%), Gaps = 19/230 (8%) Strand=Plus/Plus Query 167229 TATATAGTAATAAGTTATATATATTCCTGATGTAT---ACTTTATATTAAAGTTAT--TT 167283 |||||| | ||| ||||||||||| | || ||| | | ||||||| | ||| || Sbjct 64072869 TATATAATTATATATTATATATATTATTTATATATATAATTATATATTATATATATTATT 64072928 Query 167284 TGTTCataattaattaacatgatattatttgtatata-atttatatgaattacgaatatt 167342 | | ||||||| || || ||||||||| |||||| | |||||| |||| ||||| Sbjct 64072929 TATATATAATTATATATTAT-ATATTATTTATATATATAATTATAT--ATTATATATATT 64072985 Query 167343 atataattttaatgatctattatatatattataaatggccgaatt-ttttatataataaa 167401 || || | |||| || ||||||||||||||| || |||| | ||||||| || | Sbjct 64072986 ATTTATATATAATTATATATTATATATATTATTTAT---ATAATTATATTATATATTATA 64073042 Query 167402 tagttttat-tataacaaaatattgga----tattttgataaataattat 167446 || | |||| ||||| | |||| | ||||| ||| |||||||| Sbjct 64073043 TA-TATTATATATAATTATATATATAAATATTATTTATATATATAATTAT 64073091 >seq7 Length=173848474 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | ||||| ||| || |||| | || || || Sbjct 115442974 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGA 115442915 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| | | | || |||| ||| || |||||||| || | ||| || || ||||| || Sbjct 115442914 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 115442855 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || |||||||| ||| ||||| | | ||| | Sbjct 115442854 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGC 115442795 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||| || | | | ||||| | ||| ||||||||||| Sbjct 115442794 CTCGAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 115442744 >seq21 Length=62195757 Score = 96.9 bits (106), Expect = 6e-15 Identities = 166/240 (69%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| || Sbjct 17453557 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 17453498 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| || || | |||||| || | ||| | || Sbjct 17453497 GTAGTCAGACAAAGCACATCCATCCTCCAGTTCTTG-CTAGCAAAGATCAGTCTTTACTG 17453439 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || | || |||| ||| ||| ||||| || Sbjct 17453438 ATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATCGTATCCGA 17453379 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 17453378 GGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 17453319 >seq8 Length=162613886 Score = 96.9 bits (106), Expect = 6e-15 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | |||| ||| || ||| || Sbjct 160503481 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTT 160503422 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || | | | | | || |||| ||| || |||||||| || | ||| || || Sbjct 160503421 GTAGTCAGACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 160503364 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||| | Sbjct 160503363 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAA 160503304 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || | || || ||||| || || || | ||||| ||| | ||||||||||| Sbjct 160503303 GGGTTCAACCTTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTTATGGAAATCTGCATTTT 160503244 >seq6 Length=183735486 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || |||| | | |||| |||| ||| || |||||||| || | ||| Sbjct 139777719 AATGTTGTAGTCAGACAAAGCACATCCGTCCTCCAGTTGCTTGCCAGCAAAGATCAGTCT 139777778 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 | | ||||| || |||||||| |||||||| || || ||||||||| | | || Sbjct 139777779 TTACTCGTCAGAAGGAATTCCTTCCTTATCTTGGATGTTGGCTTTTACATT--TCCTTGT 139777836 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| | | ||| || || ||| | |||| ||| | | || ||| | ||||| ||||| Sbjct 139777837 ATCCAAGGGTTCAACCTCAAGACTGATGGCTTTCTCCATAAAGGTTGTTATGAAAATCTG 139777896 Query 172067 CATTTT 172072 |||||| Sbjct 139777897 CATTTT 139777902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905019757909200