Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq24 111 5e-19 seq18 91.5 4e-13 >seq24 Length=155392059 Score = 111 bits (122), Expect = 5e-19 Identities = 368/565 (65%), Gaps = 7/565 (1%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| | || || | || || |||||||||||||| || | | | | Sbjct 44584358 TTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCT 44584299 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || | ||||| ||| ||||||||| ||| Sbjct 44584298 TCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAATCCCCG 44584239 Query 133196 ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | || || | | ||||||| || ||| || | | || ||||| || |||||||| Sbjct 44584238 AAGCCCGAGGAGAGATATTTTATATCCCATG-TTCTGGTTTTCTTTGCAGCAAGTGATGG 44584180 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || || ||||||||| | || |||| | |||||| | | |||||||| Sbjct 44584179 CATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACAGAAGCCCG 44584120 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || ||||| | || ||||| |||||||| || |||||| | ||| | || Sbjct 44584119 CTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCT 44584060 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT-AGCG 133433 ||||| ||||||||||||||| || | ||| | || ||||| |||||| | || Sbjct 44584059 TATTGACACTTACATCAAAGATCCCAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG 44584000 Query 133434 AATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG 133493 | | |||||| | || ||| | || ||||| | ||||| |||||| | Sbjct 44583999 A--TGCCTTGTGTCAAGAAGGCGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAGG 44583942 Query 133494 CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTG 133553 | | | || | ||| | || || || |||| |||||| ||||| || || |||| Sbjct 44583941 CTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTT 44583882 Query 133554 CGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCT 133612 | || ||| || || || ||||| || || || || | | ||||| || ||||| Sbjct 44583881 C-TTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCC 44583823 Query 133613 AACGAACTTATTTCAAGGGACGAGG 133637 || ||||||||| || || |||| Sbjct 44583822 AATGAACTTATTAGCAGAGATGAGG 44583798 >seq18 Length=83442489 Score = 91.5 bits (100), Expect = 4e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| || || Sbjct 7520156 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCGTG 7520097 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 7520096 GAAAAAGAACTCAGTGGGTGTGAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 7520037 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| | ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 7520036 CTCAGGCCCGTAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 7519977 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||| || || |||||||||||||| | | | ||| | ||| |||| Sbjct 7519976 AATCCGCTTGCCCTCGACGTTCTGCTGTCCGACGACAGCAATGACCTGGGAAA 7519924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471623856370338