Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq24 111 1e-19 seq17 105 5e-18 seq9876 104 2e-17 seq2 100 2e-16 seq4 96.9 3e-15 seq18 93.3 3e-14 seq21 89.7 4e-13 seq7 84.2 2e-11 >seq24 Length=155392059 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||||| | |||||| || | || ||||||||||| | || | | || || ||| Sbjct 3658033 CAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATC 3657974 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| ||||| || || Sbjct 3657973 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTTATC 3657914 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| | || || |||| || ||||| || || || Sbjct 3657913 CTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGT 3657854 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||| |||||| || || ||||||| ||| Sbjct 3657853 CTTCCCCCTTAGGGTTTTCACGAAAATCTGCAGTTT 3657818 >seq17 Length=90481686 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 60459963 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 60460022 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 60460023 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 60460082 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || || || || || Sbjct 60460083 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 60460142 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 60460143 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 60460178 >seq9876 Length=376000 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||| |||| ||| || || || ||||| || ||||| || || | | Sbjct 278179 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 278120 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| || || || ||||| ||| | || | | ||||| || | ||| Sbjct 278119 AGACTGCAGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGA 278060 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | || ||||| ||||| | ||| |||||| |||| | |||| || | || ||| Sbjct 278059 TTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACT 278000 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || | ||||| || | |||||| || || ||||||||||| Sbjct 277999 TCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 277950 >seq2 Length=114371477 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||| |||| || || || || ||||| || ||||| || || | | Sbjct 110580062 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 110580003 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 110580002 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 110579943 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || ||| |||| | |||||| | || || Sbjct 110579942 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 110579883 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || ||||| || | |||||| || || ||||||||||| Sbjct 110579882 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 110579833 >seq4 Length=205426864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||||| || || ||||| ||||| | ||||| | || | | || || | Sbjct 27700359 CGCAGCACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGCAGTCTGAGAGAGTTCGGCCA 27700300 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || |||||||||||| ||||| ||||| || || || ||| |||| ||| Sbjct 27700299 TCCTCCAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGATA-CCTCCTTG 27700241 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||| ||| | || | |||||| | | || |||||||| || Sbjct 27700240 TCTTG-AATTTTGGCTTTCACATTCTCAATGGTGTCACTTGGCTTGACGTCAAGAGTGAT 27700182 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || ||||| || | ||| || ||||| |||||| Sbjct 27700181 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 27700148 >seq18 Length=83442489 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| |||||||| || || ||||||||||| || || | | | || ||| Sbjct 46140289 CAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTATATCCATC 46140348 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | ||| |||||||||||| || ||||| || || || || Sbjct 46140349 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 46140408 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || | |||| || | || || | || Sbjct 46140409 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCAACCTTGAGGGTGGTTGT 46140468 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 46140469 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46140504 >seq21 Length=62195757 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | | | ||| Sbjct 17453533 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGCACATCCATC 17453474 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || |||| || || |||| | |||| ||||| |||||| || ||||| || || || || Sbjct 17453473 CTCCAGTTCTT-GCTAGCAAAGATCAGTCTTTACTGATCAGGAGGAATTCCTTCCTTATC 17453415 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || | | |||||| || || || |||| || || || || || || Sbjct 17453414 CTGGGTCTTGGCCTTTATATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 17453355 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| ||||| ||||||||||| Sbjct 17453354 CTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 17453319 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/217 (69%), Gaps = 15/217 (7%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA-AT 29632 || ||| | |||||| || || || ||||||||||| || || ||| || Sbjct 34489753 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC------------AGACAT 34489706 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || ||||| ||||||||| |||| | ||||||| |||| || ||||| || || || | Sbjct 34489705 CTTCCAGTTGCTTGCCAGCAAATATTAGTCTTTGCCGATCAGGAGGAATTCCTTCCTTAT 34489646 Query 29693 CTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 | || || || || || ||| || || | || || |||| || | || || || Sbjct 34489645 CCTG-GATCTTGGTCTTTACATTTCCTGTCATATCGGAGGGTTCAACCTTGAGGGTGATG 34489587 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 ||| | || || | |||||| || || |||||||||| Sbjct 34489586 GTTCTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 34489550 >seq7 Length=173848474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| | || || | | || | ||| Sbjct 115442959 CAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGACAAAGTACATCCATC 115442900 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | |||| |||||||||||| || ||||| || || || || Sbjct 115442899 TTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 115442840 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || | |||| | || || || || || Sbjct 115442839 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGCCTCGAGGGTGATGGT 115442780 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | | | |||||| || || ||||||||||| Sbjct 115442779 CTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 115442744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385170965018634