Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq7 107 3e-18
seq13 105 9e-18
seq10042 104 3e-17
seq9897 104 3e-17
seq18 104 3e-17
seq2750 100 4e-16
seq3031 82.4 1e-10
>seq7
Length=173848474
Score = 107 bits (118), Expect = 3e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 27989369 ATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 27989428
Query 8716 TCCCCGACGAGGAGCAG 8732
||||||||| |||| ||
Sbjct 27989429 TCCCCGACGGGGAGGAG 27989445
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 28091099 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 28091040
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 28091039 CCCGACGGGGAG 28091028
Score = 102 bits (112), Expect = 1e-16
Identities = 72/81 (89%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 27989371 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 27989430
Query 11789 CCCGACGAGGAGGGAGGTTAA 11809
||||||| ||||| | ||||
Sbjct 27989431 CCCGACGGGGAGGAGGCTTAA 27989451
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 28091099 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 28091040
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 28091039 CCCGACGGGGAG 28091028
Score = 98.7 bits (108), Expect = 1e-15
Identities = 73/85 (86%), Gaps = 3/85 (4%)
Strand=Plus/Plus
Query 8648 GATGCC---TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGAC 8704
|||||| || |||||||||||||||||||| ||||| |||| ||||| | |||||| |
Sbjct 28010651 GATGCCGAGTTCTTCCTCGTTAGTATAGTGGTGAGTATACCCGCCTGTCACGCGGGAGGC 28010710
Query 8705 CGGGGTTCGATTCCCCGACGAGGAG 8729
|||||||||||||||||| | ||||
Sbjct 28010711 CGGGGTTCGATTCCCCGATGGGGAG 28010735
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 27989442 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27989383
Query 139413 TACTAACGAGGATTT 139427
|||||||||||| ||
Sbjct 27989382 TACTAACGAGGAATT 27989368
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 28091028 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 28091087
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 28091088 TACTAACGAGGA 28091099
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/72 (89%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||| ||||||||||||||
Sbjct 28010664 TCCTCGTTAGTATAGTGGTGAGTATACCCGCCTGTCACGCGGGAGGCCGGGGTTCGATTC 28010723
Query 11789 CCCGACGAGGAG 11800
||||| | ||||
Sbjct 28010724 CCCGATGGGGAG 28010735
>seq13
Length=135337776
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 97012783 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 97012842
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 97012843 CCCCGACGGGGAG 97012855
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 99501934 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 99501993
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 99501994 CCCGACGGGGAG 99502005
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 126803701 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 126803642
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 126803641 CCCGACGGGGAG 126803630
Score = 104 bits (114), Expect = 3e-17
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 126815813 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 126815754
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 126815753 CCCCGACGGGGAGG 126815740
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 126815812 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 126815753
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 126815752 CCCGACGGGGAG 126815741
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 97012784 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 97012843
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 97012844 CCCGACGGGGAGG 97012856
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 126803702 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 126803643
Query 11788 CCCCGACGAGGAG 11800
|||||||| ||||
Sbjct 126803642 CCCCGACGGGGAG 126803630
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 99501934 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 99501993
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 99501994 CCCGACGGGGAGG 99502006
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 97012855 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97012796
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 97012795 TACTAACGAGGA 97012784
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 99502005 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 99501946
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 99501945 TACTAACGAGGA 99501934
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 126803630 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 126803689
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 126803690 TACTAACGAGGA 126803701
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 126815741 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 126815800
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 126815801 TACTAACGAGGA 126815812
>seq10042
Length=1204
Score = 104 bits (114), Expect = 3e-17
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 1025 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1084
Query 11788 CCCCGACGAGGAGGGAG 11804
|||||||| ||||| ||
Sbjct 1085 CCCCGACGGGGAGGCAG 1101
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 1026 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1085
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 1086 CCCGACGGGGAG 1097
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 1097 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1038
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 1037 TACTAACGAGGA 1026
>seq9897
Length=675
Score = 104 bits (114), Expect = 3e-17
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 211 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 270
Query 11788 CCCCGACGAGGAGGGAG 11804
|||||||| ||||| ||
Sbjct 271 CCCCGACGGGGAGGCAG 287
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 212 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 271
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 272 CCCGACGGGGAG 283
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 283 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 224
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 223 TACTAACGAGGA 212
>seq18
Length=83442489
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 48168052 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 48168111
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 48168112 CCCGACGGGGAG 48168123
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 48168052 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 48168111
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 48168112 CCCGACGGGGAG 48168123
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 48168123 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 48168064
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 48168063 TACTAACGAGGA 48168052
>seq2750
Length=44035
Score = 100 bits (110), Expect = 4e-16
Identities = 247/366 (67%), Gaps = 18/366 (5%)
Strand=Plus/Plus
Query 23638 AGCCCGTATTCGAGGGCTTTCATGAGGTCTCCGAACTCCGGTTCGGTGCACCGTTTGTTG 23697
|| ||||| ||||||| |||||||||| || |||| |||||||| || ||||||
Sbjct 4654 AGGCCGTACTCGAGGGTCTTCATGAGGTGCCCAAACTGGACGTCGGTGCAGCGCTTGTTG 4713
Query 23698 TTGATGAAAATCGCCCAGTTTCGGGGCAGGTCGAGGTAGGACCGGAGCGC-GCGGTTGCA 23756
|||||||| | |||||||| |||| || ||| | ||||| ||| || | | ||||||
Sbjct 4714 TTGATGAAGAGGGCCCAGTTGCGGGCCACGTCCACGTAGG-CCGAGGCCCTGGGGTTGCC 4772
Query 23757 GATCATGTAGGTGAGCACGTTCTCGCTGGCCCTGACGTTG--CACTTGAGGCTGCTGTGC 23814
| || | ||||||| | ||| |||| | | | ||| || || | || || ||
Sbjct 4773 CACCAGGAAGGTGAGGATGTTGTCGCACTCGCGAATCTTGTTGACCTGGGTCTCGTG-GC 4831
Query 23815 TCGAACGTGGACTCGAGCGAGCTCGTCTGGGTCGGCGAGCCGACGCATACTATAACCGGC 23874
| || | ||||| | | | ||||||||||| || || ||||| ||||| ||
Sbjct 4832 T-AAAGGAGGACTGAAAGGCGTCGGTCTGGGTCGGGGATCCCACGCAGACTATGCAGGGG 4890
Query 23875 ACGCGGCCTTGCTCGTACTGCGACGATTTGTACACC---GCGTTCGTTAACCACCAGCAG 23931
||||||||| | |||| | | | || || | ||||| ||||| ||||
Sbjct 4891 ACGCGGCCTCGGCGGTACAGGGGGG---TGCGCAGCCAGGCGTTGAAGAACCAGTAGCAA 4947
Query 23932 TAGACGATGGCGGTTAGCAGGTGTCTCCCCAAGAG---CCCCGCCTCGTCGATGACGATC 23988
|||| | |||||| || | ||| | |||| ||| |||||||| | ||||||
Sbjct 4948 AAGACCACGGCGGTCAGAATGTG---GACGGAGAGCGTCCCGGCCTCGTCCACCACGATC 5004
Query 23989 ACGTTG 23994
|| |||
Sbjct 5005 ACATTG 5010
>seq3031
Length=4303
Score = 82.4 bits (90), Expect = 1e-10
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719
||||||||||||||||| ||||| |||| ||||| | |||||||||||||| ||| ||
Sbjct 2882 CTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGGGGGAGACCGGGGTTTGATCTCC 2823
Query 8720 CGACGAGGAG 8729
||||| ||||
Sbjct 2822 CGACGGGGAG 2813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652760958406560
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