Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq7 107 3e-18 seq13 105 9e-18 seq10042 104 3e-17 seq9897 104 3e-17 seq18 104 3e-17 seq2750 100 4e-16 seq3031 82.4 1e-10 >seq7 Length=173848474 Score = 107 bits (118), Expect = 3e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 27989369 ATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 27989428 Query 8716 TCCCCGACGAGGAGCAG 8732 ||||||||| |||| || Sbjct 27989429 TCCCCGACGGGGAGGAG 27989445 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 28091099 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 28091040 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 28091039 CCCGACGGGGAG 28091028 Score = 102 bits (112), Expect = 1e-16 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 27989371 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 27989430 Query 11789 CCCGACGAGGAGGGAGGTTAA 11809 ||||||| ||||| | |||| Sbjct 27989431 CCCGACGGGGAGGAGGCTTAA 27989451 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 28091099 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 28091040 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 28091039 CCCGACGGGGAG 28091028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 8648 GATGCC---TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGAC 8704 |||||| || |||||||||||||||||||| ||||| |||| ||||| | |||||| | Sbjct 28010651 GATGCCGAGTTCTTCCTCGTTAGTATAGTGGTGAGTATACCCGCCTGTCACGCGGGAGGC 28010710 Query 8705 CGGGGTTCGATTCCCCGACGAGGAG 8729 |||||||||||||||||| | |||| Sbjct 28010711 CGGGGTTCGATTCCCCGATGGGGAG 28010735 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 27989442 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27989383 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 27989382 TACTAACGAGGAATT 27989368 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 28091028 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 28091087 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 28091088 TACTAACGAGGA 28091099 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||| |||||||||||||| Sbjct 28010664 TCCTCGTTAGTATAGTGGTGAGTATACCCGCCTGTCACGCGGGAGGCCGGGGTTCGATTC 28010723 Query 11789 CCCGACGAGGAG 11800 ||||| | |||| Sbjct 28010724 CCCGATGGGGAG 28010735 >seq13 Length=135337776 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 97012783 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 97012842 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 97012843 CCCCGACGGGGAG 97012855 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 99501934 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 99501993 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 99501994 CCCGACGGGGAG 99502005 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 126803701 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 126803642 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 126803641 CCCGACGGGGAG 126803630 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 126815813 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 126815754 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 126815753 CCCCGACGGGGAGG 126815740 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 126815812 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 126815753 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 126815752 CCCGACGGGGAG 126815741 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 97012784 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 97012843 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 97012844 CCCGACGGGGAGG 97012856 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 126803702 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 126803643 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 126803642 CCCCGACGGGGAG 126803630 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 99501934 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 99501993 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 99501994 CCCGACGGGGAGG 99502006 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 97012855 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97012796 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 97012795 TACTAACGAGGA 97012784 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 99502005 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 99501946 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 99501945 TACTAACGAGGA 99501934 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 126803630 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 126803689 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 126803690 TACTAACGAGGA 126803701 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 126815741 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 126815800 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 126815801 TACTAACGAGGA 126815812 >seq10042 Length=1204 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 1025 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1084 Query 11788 CCCCGACGAGGAGGGAG 11804 |||||||| ||||| || Sbjct 1085 CCCCGACGGGGAGGCAG 1101 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1026 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1085 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1086 CCCGACGGGGAG 1097 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1097 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1038 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1037 TACTAACGAGGA 1026 >seq9897 Length=675 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 211 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 270 Query 11788 CCCCGACGAGGAGGGAG 11804 |||||||| ||||| || Sbjct 271 CCCCGACGGGGAGGCAG 287 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 212 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 271 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 272 CCCGACGGGGAG 283 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 283 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 224 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 223 TACTAACGAGGA 212 >seq18 Length=83442489 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 48168052 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 48168111 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 48168112 CCCGACGGGGAG 48168123 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 48168052 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 48168111 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 48168112 CCCGACGGGGAG 48168123 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 48168123 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 48168064 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 48168063 TACTAACGAGGA 48168052 >seq2750 Length=44035 Score = 100 bits (110), Expect = 4e-16 Identities = 247/366 (67%), Gaps = 18/366 (5%) Strand=Plus/Plus Query 23638 AGCCCGTATTCGAGGGCTTTCATGAGGTCTCCGAACTCCGGTTCGGTGCACCGTTTGTTG 23697 || ||||| ||||||| |||||||||| || |||| |||||||| || |||||| Sbjct 4654 AGGCCGTACTCGAGGGTCTTCATGAGGTGCCCAAACTGGACGTCGGTGCAGCGCTTGTTG 4713 Query 23698 TTGATGAAAATCGCCCAGTTTCGGGGCAGGTCGAGGTAGGACCGGAGCGC-GCGGTTGCA 23756 |||||||| | |||||||| |||| || ||| | ||||| ||| || | | |||||| Sbjct 4714 TTGATGAAGAGGGCCCAGTTGCGGGCCACGTCCACGTAGG-CCGAGGCCCTGGGGTTGCC 4772 Query 23757 GATCATGTAGGTGAGCACGTTCTCGCTGGCCCTGACGTTG--CACTTGAGGCTGCTGTGC 23814 | || | ||||||| | ||| |||| | | | ||| || || | || || || Sbjct 4773 CACCAGGAAGGTGAGGATGTTGTCGCACTCGCGAATCTTGTTGACCTGGGTCTCGTG-GC 4831 Query 23815 TCGAACGTGGACTCGAGCGAGCTCGTCTGGGTCGGCGAGCCGACGCATACTATAACCGGC 23874 | || | ||||| | | | ||||||||||| || || ||||| ||||| || Sbjct 4832 T-AAAGGAGGACTGAAAGGCGTCGGTCTGGGTCGGGGATCCCACGCAGACTATGCAGGGG 4890 Query 23875 ACGCGGCCTTGCTCGTACTGCGACGATTTGTACACC---GCGTTCGTTAACCACCAGCAG 23931 ||||||||| | |||| | | | || || | ||||| ||||| |||| Sbjct 4891 ACGCGGCCTCGGCGGTACAGGGGGG---TGCGCAGCCAGGCGTTGAAGAACCAGTAGCAA 4947 Query 23932 TAGACGATGGCGGTTAGCAGGTGTCTCCCCAAGAG---CCCCGCCTCGTCGATGACGATC 23988 |||| | |||||| || | ||| | |||| ||| |||||||| | |||||| Sbjct 4948 AAGACCACGGCGGTCAGAATGTG---GACGGAGAGCGTCCCGGCCTCGTCCACCACGATC 5004 Query 23989 ACGTTG 23994 || ||| Sbjct 5005 ACATTG 5010 >seq3031 Length=4303 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||| ||||| |||| ||||| | |||||||||||||| ||| || Sbjct 2882 CTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGGGGGAGACCGGGGTTTGATCTCC 2823 Query 8720 CGACGAGGAG 8729 ||||| |||| Sbjct 2822 CGACGGGGAG 2813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652760958406560