Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 3e-28
seq13 131 2e-25
seq1 114 1e-20
seq8 104 2e-17
seq3 100 3e-16
seq9876 98.7 1e-15
seq17 98.7 1e-15
seq15 86.0 6e-12
seq14 84.2 2e-11
>seq2
Length=114371477
Score = 140 bits (154), Expect = 3e-28
Identities = 152/199 (76%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || ||||| || | ||| | | | || || ||||||||||
Sbjct 110580033 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 110579975
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||||||||||||||||||||| || |||||| ||
Sbjct 110579974 CTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 110579915
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||| |||||||||| || | ||||| ||| |||||||| || |
Sbjct 110579914 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGG 110579855
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||| ||||| ||||||||
Sbjct 110579854 TTTTCACGAAGATCTGCAT 110579836
>seq13
Length=135337776
Score = 131 bits (144), Expect = 2e-25
Identities = 150/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| || ||||| || || || ||| | || || ||||| || |
Sbjct 126789560 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCA-TCTTCCAGCTGTTTTC 126789618
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || | || ||||||||| ||||||||||||||||| || ||||||| ||
Sbjct 126789619 CGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCT 126789678
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| ||||||| || |||| ||||| ||| || || |||||||
Sbjct 126789679 TGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTACCAGTCAGAG 126789738
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 126789739 TCTTCACAAAGATCTGCAT 126789757
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||||||||| || ||||| || || ||| | | | || || ||||| || ||
Sbjct 126789333 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCCC 126789391
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || | || ||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 126789392 AGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCTTT 126789451
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||| | ||||| ||||||| || || | ||||| ||| ||||| || || ||
Sbjct 126789452 GACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGTGT 126789511
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| || |||||
Sbjct 126789512 CTTCACGAAGATTTGCAT 126789529
Score = 98.7 bits (108), Expect = 1e-15
Identities = 145/200 (73%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| || || || || | || | | | ||||| ||||| ||||
Sbjct 116540612 GGTGGACTCTTTCTGGATGTTCTAGTCTGAGAGACTGTGGCCA-TCCTCCAGCTGTTTGC 116540670
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580
|| | | || || | ||||||||| || ||||||| |||||||| ||| ||| ||
Sbjct 116540671 CCACAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTCTTGGAT-TTTAGCT 116540729
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|||| | ||||| ||||| ||||||||| || | ||||| ||| ||||| || ||
Sbjct 116540730 TTGACATTCTCAATGGTGTCACCGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGG 116540789
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || | || ||||||||
Sbjct 116540790 GTGTTCATAAAGATCTGCAT 116540809
>seq1
Length=229774977
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||||||||| || ||||| || | || | || || |||||| ||||
Sbjct 198269201 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACAGCCATCTTCTAGCTGCATGCC 198269260
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||||| |||||||||||| ||||||||||||| || ||| || |||
Sbjct 198269261 TGCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTT 198269320
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | ||||| |||||||||| || | ||||| ||| ||||| ||||| ||
Sbjct 198269321 CACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 198269380
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 198269381 CTTCACGAAGATCTGCAT 198269398
>seq8
Length=162613886
Score = 104 bits (114), Expect = 2e-17
Identities = 145/198 (73%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCC 133523
||||||||||||| || ||| | || | ||| | | | ||||| ||||| ||||||
Sbjct 25941861 TGGACTCTTTCTGGATGTTGCAGTCTAAGAGAGTGCGGCCA-TCCTCCAGCTGTTTGCCC 25941919
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582
|| | || || || |||||||| | || ||||| |||||||| ||| ||| | |||
Sbjct 25941920 GCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTC-TTGAATTTTGGCCTT 25941978
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| ||||| ||||||| || |||| ||||| ||| ||||| || || ||
Sbjct 25941979 GACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGT 25942038
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || ||||||||
Sbjct 25942039 CTTCACAAAGATCTGCAT 25942056
>seq3
Length=247869975
Score = 100 bits (110), Expect = 3e-16
Identities = 148/209 (71%), Gaps = 12/209 (6%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || ||||| || | ||| | | | || || ||||||||||
Sbjct 140398430 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 140398488
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGG----------GAGGGATGCCTTCCTTGTCGGTG 133571
| || | ||||||| ||||||||||| | ||| ||||||| || || |
Sbjct 140398489 CTGCAAAGATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGCCTTCTTTATCCTGG 140398548
Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||||| ||| | | || | ||||| |||||||||| || | ||||| ||| |||
Sbjct 140398549 ATCTTGGCCTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 140398608
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| || || ||||| ||||||||
Sbjct 140398609 CCAGTCAGGGTCTTCACGAAGATCTGCAT 140398637
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || | ||||||| | || | ||||||| ||||||||| || | |||||||||||
Sbjct 140398711 TCTTCCACCTGCTTGACTGCAAAGATGAGCCTCTGCTGGTCCGGGGTAATGCCTTCCTTA 140398770
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||| | | || | ||||| |||||||||| || | || | |
Sbjct 140398771 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCCCTGGGCTCCACTTCAAGGGCAATG 140398830
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| |||| ||| || || || ||||| ||||||||
Sbjct 140398831 GTCTTGCTGGTAAGGGTCTTCACGAAGATCTGCAT 140398865
>seq9876
Length=376000
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||| ||||||||||| || ||||| || | || | || || |||||
Sbjct 278156 ATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCAGCCATCTTCCAGCTG 278097
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| || | |||||| ||||||||| | || ||||||| || || ||| ||
Sbjct 278096 CTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGATTGCCTTCTTTATCTTGGATTTT 278037
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||||| | || | ||| | |||||||||| || | ||||| | | ||||||||
Sbjct 278036 GGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGATCTTGCCGGT 277977
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| ||||| ||||||||
Sbjct 277976 AAGGGTTTTCACGAAGATCTGCAT 277953
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/156 (73%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCG-GGAGGGATGCCTTCCTT 133564
|| || | || |||||| || | ||||||| |||||| ||| || ||||||||||| |
Sbjct 278336 TCTTCCAACTTCTTGCCTGCAAAGATGAGCCTCTGCTGATCGCGGGGGGATGCCTTCTTC 278277
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| |||||| || | | || | ||||| |||||||||| || | |||||
Sbjct 278276 ATCCTGGATCTTGGCTTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 278217
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||| || |||||||| || || ||||| ||||||||
Sbjct 278216 GGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 278181
>seq17
Length=90481686
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| || || |||||||| || || || | | | || || |||||||||||
Sbjct 60459979 GTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGCTGCTTGCC 60460037
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || | |||||| || ||||| || |||||||| || |||||| |||
Sbjct 60460038 AGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 60460097
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | ||| || | ||| || || |||| ||||| ||| || || || || ||
Sbjct 60460098 TACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 60460157
Query 133643 TTTTACGAAAATCTGCAT 133660
||| ||||||||||||||
Sbjct 60460158 TTTCACGAAAATCTGCAT 60460175
>seq15
Length=107357366
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| || || || || | || | | | ||||| | ||| |||
Sbjct 20294768 GGTGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTACGGCCA-TCCTCCAACTGTTTGT 20294710
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| | | || || |||||||||| || |||||||| ||||||||| |||||| |
Sbjct 20294709 TCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCGTGGATCTTGGCTT 20294650
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| ||||| | |||| || || | ||||| ||||||||| || || |
Sbjct 20294649 TGACATTTTCACTGGTGTCACTTGGCTGGACCTCAAGGGTGATGGTTTTGCCTGTGAGGG 20294590
Query 133642 TTTTTACGAAAATCTGCAT 133660
| ||||| | ||||||||
Sbjct 20294589 TCTTTACAGAGATCTGCAT 20294571
Score = 86.0 bits (94), Expect = 6e-12
Identities = 142/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| || ||||| | | ||| | | | ||||| ||| | || |
Sbjct 57005310 GGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCA-TCCTCCAGCCGTTTCC 57005252
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| | || || |||||||||| || ||||| || |||||||| ||| ||| | |
Sbjct 57005251 TAGAAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCC-TGAATTTTGGTT 57005193
Query 133582 T-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
| || | || || ||||||||||||| || || | ||||| ||| ||||| || ||
Sbjct 57005192 TTGACATTCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGGTCTTGCCCGTGAGG 57005133
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || || || ||||||||
Sbjct 57005132 GTCTTCACAAAGATCTGCAT 57005113
>seq14
Length=114479721
Score = 84.2 bits (92), Expect = 2e-11
Identities = 113/154 (73%), Gaps = 5/154 (3%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||||||||| ||| | ||||||| ||||||||| || |||||| |||| ||
Sbjct 87528451 TCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCTGG-GGGATGTCTTCTTTA 87528393
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||| || | || | | |||| |||| || || || || | |||||||
Sbjct 87528392 TCCTGGATC-TTGGTTTCATATTTTCAATGCTGTCACTG---TCTACCTCCAGGGTGACG 87528337
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659
|| ||||| || || || || ||||| |||||||
Sbjct 87528336 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCA 87528303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483358716683760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |