Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq13 131 2e-25 seq1 114 1e-20 seq8 104 2e-17 seq3 100 3e-16 seq9876 98.7 1e-15 seq17 98.7 1e-15 seq15 86.0 6e-12 seq14 84.2 2e-11 >seq2 Length=114371477 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 110580033 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 110579975 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||||||||||||||||||||| || |||||| || Sbjct 110579974 CTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 110579915 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| |||||||| || | Sbjct 110579914 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGG 110579855 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 110579854 TTTTCACGAAGATCTGCAT 110579836 >seq13 Length=135337776 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || || || ||| | || || ||||| || | Sbjct 126789560 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCA-TCTTCCAGCTGTTTTC 126789618 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| ||||||||||||||||| || ||||||| || Sbjct 126789619 CGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCT 126789678 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || |||| ||||| ||| || || ||||||| Sbjct 126789679 TGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTACCAGTCAGAG 126789738 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 126789739 TCTTCACAAAGATCTGCAT 126789757 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 126789333 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCCC 126789391 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| |||||||||||||||||||| ||||||| || Sbjct 126789392 AGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCTTT 126789451 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || || | ||||| ||| ||||| || || || Sbjct 126789452 GACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGTGT 126789511 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 126789512 CTTCACGAAGATTTGCAT 126789529 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || || || || | || | | | ||||| ||||| |||| Sbjct 116540612 GGTGGACTCTTTCTGGATGTTCTAGTCTGAGAGACTGTGGCCA-TCCTCCAGCTGTTTGC 116540670 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 || | | || || | ||||||||| || ||||||| |||||||| ||| ||| || Sbjct 116540671 CCACAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTCTTGGAT-TTTAGCT 116540729 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| ||||| ||||||||| || | ||||| ||| ||||| || || Sbjct 116540730 TTGACATTCTCAATGGTGTCACCGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGG 116540789 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || | || |||||||| Sbjct 116540790 GTGTTCATAAAGATCTGCAT 116540809 >seq1 Length=229774977 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || ||||| || | || | || || |||||| |||| Sbjct 198269201 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACAGCCATCTTCTAGCTGCATGCC 198269260 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| |||||||||||| ||||||||||||| || ||| || ||| Sbjct 198269261 TGCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTT 198269320 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 198269321 CACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 198269380 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 198269381 CTTCACGAAGATCTGCAT 198269398 >seq8 Length=162613886 Score = 104 bits (114), Expect = 2e-17 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCC 133523 ||||||||||||| || ||| | || | ||| | | | ||||| ||||| |||||| Sbjct 25941861 TGGACTCTTTCTGGATGTTGCAGTCTAAGAGAGTGCGGCCA-TCCTCCAGCTGTTTGCCC 25941919 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 || | || || || |||||||| | || ||||| |||||||| ||| ||| | ||| Sbjct 25941920 GCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTC-TTGAATTTTGGCCTT 25941978 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| ||||||| || |||| ||||| ||| ||||| || || || Sbjct 25941979 GACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGT 25942038 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 25942039 CTTCACAAAGATCTGCAT 25942056 >seq3 Length=247869975 Score = 100 bits (110), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 12/209 (6%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 140398430 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 140398488 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGG----------GAGGGATGCCTTCCTTGTCGGTG 133571 | || | ||||||| ||||||||||| | ||| ||||||| || || | Sbjct 140398489 CTGCAAAGATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGCCTTCTTTATCCTGG 140398548 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||| ||| | | || | ||||| |||||||||| || | ||||| ||| ||| Sbjct 140398549 ATCTTGGCCTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 140398608 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || ||||| |||||||| Sbjct 140398609 CCAGTCAGGGTCTTCACGAAGATCTGCAT 140398637 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | ||||||| | || | ||||||| ||||||||| || | ||||||||||| Sbjct 140398711 TCTTCCACCTGCTTGACTGCAAAGATGAGCCTCTGCTGGTCCGGGGTAATGCCTTCCTTA 140398770 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | ||||| |||||||||| || | || | | Sbjct 140398771 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCCCTGGGCTCCACTTCAAGGGCAATG 140398830 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| ||| || || || ||||| |||||||| Sbjct 140398831 GTCTTGCTGGTAAGGGTCTTCACGAAGATCTGCAT 140398865 >seq9876 Length=376000 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||||||||| || ||||| || | || | || || ||||| Sbjct 278156 ATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCAGCCATCTTCCAGCTG 278097 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | |||||| ||||||||| | || ||||||| || || ||| || Sbjct 278096 CTTGCCTGCAAAGATGAGCTTCTGCTGGTCATGGGGATTGCCTTCTTTATCTTGGATTTT 278037 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | || | ||| | |||||||||| || | ||||| | | |||||||| Sbjct 278036 GGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGATCTTGCCGGT 277977 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| |||||||| Sbjct 277976 AAGGGTTTTCACGAAGATCTGCAT 277953 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCG-GGAGGGATGCCTTCCTT 133564 || || | || |||||| || | ||||||| |||||| ||| || ||||||||||| | Sbjct 278336 TCTTCCAACTTCTTGCCTGCAAAGATGAGCCTCTGCTGATCGCGGGGGGATGCCTTCTTC 278277 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || |||||| || | | || | ||||| |||||||||| || | ||||| Sbjct 278276 ATCCTGGATCTTGGCTTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 278217 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || |||||||| || || ||||| |||||||| Sbjct 278216 GGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 278181 >seq17 Length=90481686 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || |||||||| || || || | | | || || ||||||||||| Sbjct 60459979 GTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGCTGCTTGCC 60460037 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || | |||||| || ||||| || |||||||| || |||||| ||| Sbjct 60460038 AGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 60460097 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||| || | ||| || || |||| ||||| ||| || || || || || Sbjct 60460098 TACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 60460157 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 60460158 TTTCACGAAAATCTGCAT 60460175 >seq15 Length=107357366 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || || || || | || | | | ||||| | ||| ||| Sbjct 20294768 GGTGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTACGGCCA-TCCTCCAACTGTTTGT 20294710 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | | | || || |||||||||| || |||||||| ||||||||| |||||| | Sbjct 20294709 TCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCGTGGATCTTGGCTT 20294650 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| ||||| | |||| || || | ||||| ||||||||| || || | Sbjct 20294649 TGACATTTTCACTGGTGTCACTTGGCTGGACCTCAAGGGTGATGGTTTTGCCTGTGAGGG 20294590 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||| | |||||||| Sbjct 20294589 TCTTTACAGAGATCTGCAT 20294571 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| | | ||| | | | ||||| ||| | || | Sbjct 57005310 GGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCA-TCCTCCAGCCGTTTCC 57005252 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | | || || |||||||||| || ||||| || |||||||| ||| ||| | | Sbjct 57005251 TAGAAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCC-TGAATTTTGGTT 57005193 Query 133582 T-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | || | || || ||||||||||||| || || | ||||| ||| ||||| || || Sbjct 57005192 TTGACATTCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGGTCTTGCCCGTGAGG 57005133 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 57005132 GTCTTCACAAAGATCTGCAT 57005113 >seq14 Length=114479721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/154 (73%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| ||| | ||||||| ||||||||| || |||||| |||| || Sbjct 87528451 TCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCTGG-GGGATGTCTTCTTTA 87528393 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||| || | || | | |||| |||| || || || || | ||||||| Sbjct 87528392 TCCTGGATC-TTGGTTTCATATTTTCAATGCTGTCACTG---TCTACCTCCAGGGTGACG 87528337 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 || ||||| || || || || ||||| ||||||| Sbjct 87528336 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCA 87528303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483358716683760