Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq4 194 2e-44 seq10 192 7e-44 seq7 127 2e-24 >seq4 Length=205426864 Score = 194 bits (214), Expect = 2e-44 Identities = 238/325 (73%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||||| || || |||| | | || || || || || | ||||| ||||| || | || Sbjct 116416817 CATAGACGGTGAGGCAGGCCGTTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGAC 116416758 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||| | ||||| || || | || || ||| || Sbjct 116416757 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGA 116416698 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||| | | |||||| || | |||||||| || || || || | Sbjct 116416697 GTCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGT 116416638 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| |||||||||| ||||| ||| || | |||||||| || || | Sbjct 116416637 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 116416578 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | |||| | | | |||| ||||||||| |||| ||||||||||||| || | Sbjct 116416577 TGAGGGCTTCCTGGGCATTTTGCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCT 116416518 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 116416517 CTCTTTCATCCTGGGTCACCACTTG 116416493 Score = 107 bits (118), Expect = 2e-18 Identities = 160/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || ||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| Sbjct 116419347 ACGGTTTGCTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 116419290 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||| | ||||| ||||| | || || ||||| |||||||| || ||||| Sbjct 116419289 -TCCCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCA 116419231 Query 171623 TTACGATGTAGAACG-GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | || ||| | || ||||||||||| || || || | | || ||||| || Sbjct 116419230 TTTGGGTG-AGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAA 116419172 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | | || ||||| | ||||| ||||||||||| || |||| Sbjct 116419171 GACCATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 116419128 >seq10 Length=138149186 Score = 192 bits (212), Expect = 7e-44 Identities = 600/921 (65%), Gaps = 11/921 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||||| | || ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 75364630 TTATGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 75364571 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| || || || ||||| || | || || | |||||| Sbjct 75364570 TTATTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAA 75364514 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || ||||| || || || ||| || || || | || || | | ||| Sbjct 75364513 ATGCACACTGAGCGCACATGGACTCCATCGCAGGGAGGGTAGGGAGCACCCTTGGAAACA 75364454 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| |||| |||||||| || ||||| | | || |||||||| || || Sbjct 75364453 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCA 75364394 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | || || || | || | || || | || ||||| Sbjct 75364393 TACTTATGG-CTGGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTTTGGATGGTGGCCCA 75364335 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || || || || || | | ||||||||| |||| || ||| Sbjct 75364334 GAGATACTCATCAGGGCTGTATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTC 75364275 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | ||||| || || |||||||| Sbjct 75364274 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAA 75364215 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 75364214 AAGAGGTGTTTCGAGTGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCATT 75364155 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGGTCT 162604 |||||| | | | |||| ||||||| | |||| ||| | | | || || | Sbjct 75364154 AACGACCTCATACCGCTTCTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCGTTT 75364096 Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664 | || |||| ||| || ||| |||| | || || ||||| ||||| |||| Sbjct 75364095 CCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 75364036 Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724 ||||| || | || || ||||| || | || ||||| || | || | | || | Sbjct 75364035 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATCGCATAGA 75363976 Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784 |||||| | ||||| || || ||||| || || |||||||| || || || || |||| Sbjct 75363975 GATCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 75363916 Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844 |||| | |||| ||||||||||| ||||| ||| | || |||||||| || | Sbjct 75363915 CCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTGCAGCTA 75363856 Query 162845 AGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 | | ||| || | ||| | || || || | |||||| | ||||||||| || Sbjct 75363855 AATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAGTAGAAATTCTGAGGCATATA 75363798 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 |||||||||||| | || || | ||| || ||||| || || ||||| |||||||| || Sbjct 75363797 GATGGCCCTCAGCAGCCTGTCAAGCATGTCAATCTTGTGATGAACCACTATAGAATATGC 75363738 Query 162963 TATGGGGAACTCAGCCTCCTC 162983 ||| || ||||| ||||| || Sbjct 75363737 TATTGGAAACTCCGCCTCTTC 75363717 >seq7 Length=173848474 Score = 127 bits (140), Expect = 2e-24 Identities = 399/607 (66%), Gaps = 17/607 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 97933585 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTCG 97933526 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 97933525 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 97933466 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| || || Sbjct 97933465 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 97933406 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||| || ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 97933405 TGTATAGCTTTTCAGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 97933346 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 97933345 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 97933288 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || ||| | | Sbjct 97933287 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACTCTGGCAT 97933229 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || || || |||||||| || || Sbjct 97933228 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAA-TTTCTCTTTGCTTGGCAC---- 97933174 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | ||||| ||||| || ||||| || Sbjct 97933173 TTCAAACACGAAGGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 97933114 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 || || | ||| || | || || || || | || || || | || |||| ||| Sbjct 97933113 ATCACGGCGGTAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 97933056 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | || | Sbjct 97933055 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 97932996 Query 177480 GTAGGTA 177486 ||||| Sbjct 97932995 TGAGGTA 97932989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578357714870400