Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_024771.1 Length=151601 Score E Sequences producing significant alignments: (Bits) Value seq2750 91.5 1e-13 >seq2750 Length=44035 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 107304 GCGTGTGACCCCGGCTGTCCGCGCCGCACCGTGAGCGTCGTGTTGATGAGGAGCACCCCC 107363 |||||||| || |||| || |||| || || | ||||||| || | ||| ||| Sbjct 2142 GCGTGTGAGCCGGGCTTGCCCTTTTGCACAGTCAGGATGGTGTTGAGTAGCAACACTCCC 2083 Query 107364 TGGAGGGCCCACTTTTCCAGGTAGCCGTGGGCGGGGAG-GCGAAATGCCGGGTAGGTCTT 107422 ||| ||||||| ||||| ||||||| | ||| | | ||| | |||| ||| Sbjct 2082 TGGGAGGCCCACGCGTCCAGACAGCCGTGATCCGGGGGAGAGAACT-CCGGCAGACTCTG 2024 Query 107423 TTGCACCGCCGCGTAGATGTTGCGCAGGCTTGGGGGAACTGGCACCCCCTTTCGCACGCT 107482 || | | | ||||||||| | |||||| ||||||| ||| | || | | |||||| Sbjct 2023 ATGAAGTTCTGTGTAGATGTTCCTCAGGCTGGGGGGAATTGGGAAGCCGTATGCCACGCT 1964 Query 107483 GAAAGCCAGCCCGTGCGCCTGGCCGGGGCCGTGGTAGGGGTCCTGGCC 107530 ||| ||||| |||| || || || ||||| |||||||||||||| Sbjct 1963 GAATGCCAGGCCGTTTGCTTGACCT---CCGTGATAGGGGTCCTGGCC 1919 Score = 82.4 bits (90), Expect = 7e-11 Identities = 189/286 (66%), Gaps = 24/286 (8%) Strand=Plus/Minus Query 83297 GGCAATGGAGACGGCCGCGTCCTGGCTGCTGTTGCCCTCGACGGCCACCCGCACCGCGTC 83356 ||| |||| || || | ||||||||| ||||||||||| || || | | | || | || Sbjct 21141 GGCGATGGCTACCGCAGAGTCCTGGCTACTGTTGCCCTCCACTGCTATCTTCGCCTCCTC 21082 Query 83357 AAAG----GGTCGCGGGTG--GATGGCGAAGATCTGCGCCAAGCACTGGGCTGCACACCG 83410 |||| ||| | ||| ||| | | |||| | |||| | || ||| Sbjct 21081 AAAGTGGGGGTGCAGCGTGACGATCGAGGAGATGAGGGCCACG---------GCGCACGT 21031 Query 83411 GGCGATGAGCTCGGCGGAGCTGCCCGTGAGGGCGCTCAGGAAAAAGTGCTCCAGGCCAAA 83470 |||||| | ||||| | ||||| ||| | ||||||| ||||| |||||||| | Sbjct 21030 GGCGATCTGGAGGGCGGCGTCCCCCGTCAGGTCCTTCAGGAAGAAGTGTTCCAGGCCTAG 20971 Query 83471 AACAAT---------CCAGTCAGACCGGTAGCGGCCCACGACCGCCACGCCCGTCCCGGA 83521 || || | || |||| || | || |||| | || | ||| || ||||| Sbjct 20970 GACGATGACCCTGGTCGGGTTCGACCTGTCGTGGGTCACGGCGGCGATGCCGGTGCCGGA 20911 Query 83522 CGCCAGGGAGTTGGTGGTAAAGGCCGGGTCTACGTACACGTAGAGG 83567 || || |||| ||||| ||||||| || ||||||||||||||| Sbjct 20910 GGCGGAGGTGTTGTTGGTATAGGCCGGATCCACGTACACGTAGAGG 20865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 484932914491440