Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 seq4 95.1 8e-15 seq10 93.3 3e-14 seq15 84.2 1e-11 seq8 84.2 1e-11 >seq13 Length=135337776 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || | ||| |||||| || |||||||| || || Sbjct 126789531 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789590 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| |||||||||||||| ||||| | |||||| || | || Sbjct 126789591 AGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789650 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || || | |||| || | |||||| || | || || Sbjct 126789651 ATGCCTTCCTTATCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCAAC 126789709 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || ||||| || | || || |||||||||||||| || Sbjct 126789710 CTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCATTGT 126789760 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| |||||| || ||||| || || ||| Sbjct 116540583 CCACCTCACAGGCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAG 116540642 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || |||| ||||| || |||| |||| || |||||| || || | Sbjct 116540643 AGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAGG 116540702 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| ||||| ||| | ||| ||| |||||| | | ||||| Sbjct 116540703 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGA-CATTCTCAATGGTGTCACCGGGCTCCAC 116540761 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || | |||||||||||| Sbjct 116540762 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCAT 116540809 >seq4 Length=205426864 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||| || || | ||||| || || ||| |||||| | |||||| | || ||| Sbjct 27700371 CCACCTTACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGCAGTCTGAG 27700312 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||||| || |||| |||| | ||||||| || | || Sbjct 27700311 AGAGTTCGGCCATCCTCCAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGG 27700252 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||| ||| ||| |||||| ||||| ||| ||| |||||| |||| | || Sbjct 27700251 ATACCTCCTT-GTCTTGAATTTTGGCTTTCA-CATTCTCAATGGTGTCACTTGGCTTGAC 27700194 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGC 33747 ||||| ||||| || || || || | || || |||||||||||| Sbjct 27700193 GTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 27700148 >seq10 Length=138149186 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || | | ||||| || | ||| || ||| || | |||||| || ||| Sbjct 22465155 CCACCTCGCAGGTGCAGCACCAGGTGCGGGGTGGGCTGTTTCTGGACGTTGTAGTCTGAG 22465096 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| | |||||| |||| |||||||| || | || Sbjct 22465095 AGAGTGCGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTTGTCAGGGGGG 22465036 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| ||||||| | | ||| ||| |||||| || | || || Sbjct 22465035 ATACCCTCCTTGTCTTGAATTTTCGCACTGA-CATTCTCAATGGTGTCACTGGGCTCGAC 22464977 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 22464976 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 22464929 >seq15 Length=107357366 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| | || ||| |||||| || |||||||| | ||| Sbjct 57005339 CCACCTCGCAGGCGCAGCACCAGGTTGAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAG 57005280 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||| | | || |||| |||| | | ||| |||| | ||||||| || | || Sbjct 57005279 AGAGTGTGGCCATCCTCCAGCCGTTTCCTAGAAAATATCAGATGCTGCTGGTCAGGTGGG 57005220 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| |||| |||| | | ||||||| | | | || Sbjct 57005219 ATACCCTCCTTGTCCTGAATTTTG-GTTTTGACATTCTAAATGGTGTCGGTGGGCTTGAC 57005161 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 57005160 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 57005113 >seq8 Length=162613886 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||| | || |||| ||||| | || |||| ||||| || ||||| Sbjct 25941865 CTCTTTCTGGATGTTGCAGTCTAAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 25941924 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||| ||||| || | || | || || ||||| |||||| || | ||| Sbjct 25941925 TATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGA-CAT 25941983 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| |||||| || | || || || | ||||| || || ||||| | || || | Sbjct 25941984 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 25942043 Query 33737 CAAAGATCTGCAT 33749 ||||||||||||| Sbjct 25942044 CAAAGATCTGCAT 25942056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328662841534080