Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17 120 7e-22 seq7 114 3e-20 seq21 107 5e-18 seq24 104 6e-17 seq8 98.7 2e-15 seq10 96.9 8e-15 seq18 93.3 1e-13 seq2 89.7 1e-12 seq3 86.0 1e-11 seq13 84.2 5e-11 seq6 84.2 5e-11 >seq17 Length=90481686 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || ||| || || || | ||| Sbjct 60460160 AAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAAT 60460101 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || || ||||| ||||| Sbjct 60460100 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTT 60460041 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||||||| | |||||| | || ||||| | || || |||||| Sbjct 60460040 GCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCT 60459981 Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388 |||||||| ||||| ||||||||| Sbjct 60459980 ACTCTTCATCTTGTGTTGAGACTT 60459957 Score = 105 bits (116), Expect = 2e-17 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 ||||||||| ||||| |||||||||||||| || || | ||| ||||||| |||||| | Sbjct 60459957 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACG 60460016 Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||||||||| || || ||||| || Sbjct 60460017 TCCATCTTCCAGCTGCTTGCCAGCAAAGATCAG 60460049 >seq7 Length=173848474 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 115442822 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 115442881 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| ||||||||||| | |||||| | || |||| | || || |||||| Sbjct 115442882 GCTGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAGTATTCAAAAGGAGTCT 115442941 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 115442942 ACTCTTCATCTTGTGTTGAGACTTCG 115442967 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | | | ||||||| |||||| Sbjct 115442967 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGACAAAGTA 115442908 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| |||||||| || ||||| || | ||| ||| Sbjct 115442907 CATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGA 115442863 >seq21 Length=62195757 Score = 107 bits (118), Expect = 5e-18 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| |||||||| || || ||||| | || || ||| Sbjct 17453319 AAAATG---CAGATTTTTGTGAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAA 17453375 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || || || | ||| ||||| |||| || || || ||||||||| || Sbjct 17453376 CCCTCGGATACGATAGAAAATATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCT 17453435 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||||||| ||||| || | ||| | | ||| |||||| | ||||| | || Sbjct 17453436 GATCAGTAAAGACTGATCTTTGCTAGCAAGAACT-GGAGGATGGATGTGCTTTGTCTGAC 17453494 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| | || || |||||||||||||| ||||| ||||||||||| Sbjct 17453495 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCG 17453541 >seq24 Length=155392059 Score = 104 bits (114), Expect = 6e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||| || || || |||||||||| || ||| |||||||| |||||| Sbjct 6848660 GTAAAGGCCAAGACCCAGGATAAGGAAGGAATTTCTCCTGACCAGCAAAGACTGATCTTC 6848719 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | ||||| ||||||||||| | |||||| | || |||||| | || | ||||| Sbjct 6848720 GCTGTCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAGAGGAGTCC 6848779 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| | ||| |||||| ||| Sbjct 6848780 ACTCTTCATCATGTGTTGAGATTTC 6848804 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || || |||||| || || |||||||| ||||| Sbjct 3657896 GTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 3657955 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || | |||| | || || ||| || Sbjct 3657956 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGCAACATTCAAAAGGAGCCT 3658015 Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388 |||||||| ||| | |||||||| Sbjct 3658016 ACTCTTCATCTTTTGCTGAGACTT 3658039 >seq8 Length=162613886 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 160503322 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 160503381 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | || || | || |||||| | || || ||| | Sbjct 160503382 GCTGGCAAGCAACTGGAAGATGGATGTAC--TGTCTGACTACAACATTCAAAAGGAGCTT 160503439 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 160503440 ACTCTTCATCTTGTGTTGAGACTTCG 160503465 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| ||||||||| ||| || || | || ||||||| | ||| Sbjct 160503465 CGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTTGTAGTCAG--ACAGTA 160503408 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 160503407 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 160503363 >seq10 Length=138149186 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 206173 CAGATATT-TTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| || || ||||| || | |||| || |||||| |||| | ||| | || Sbjct 71529183 CAGATTTTCTTTAAAAACCCTTATGGGAATGACCATCACTCTGGAGTTTGAACCCTTGGA 71529124 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGA-AGGAATTTTGCCGGACGCTC 206290 ||| | ||| | |||| ||||| | || | |||| |||||||| | || | Sbjct 71529123 TACAATAGAAAATGCAAAGTCCAAGAT-CTAGGATAAGACAGGAATTTCTACTGATCAGC 71529065 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 ||||||| ||||| | || ||| | ||||||||||| | ||||| | | |||||| Sbjct 71529064 AAAGACTGATCTTTGTTGGCAAGAAACTGGAAGATGGATGTGCTTTGACTGGGTACAACA 71529005 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 | || || |||||||||||||| ||||| |||||||||| Sbjct 71529004 TTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTC 71528966 >seq18 Length=83442489 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || ||||||| ||||| Sbjct 46140426 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACCGATCTTT 46140367 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| |||||| | | ||||| | || ||||||||| Sbjct 46140366 GCTGGCAAGCAACTGGAAGATGGATATACTTTGTCTGGCTACAATATTCAAAAAGAGTCT 46140307 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| |||| |||||||| || Sbjct 46140306 ACCCTTCATTTTGTGTTGAGACTGCG 46140281 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| |||| ||||| ||||||||||| || | ||| ||| ||| |||||| Sbjct 46140281 CGCAGTCTCAACACAAAATGAAGGGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTA 46140340 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || ||||| | | ||| ||| Sbjct 46140341 TATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGA 46140385 >seq2 Length=114371477 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || ||||| |||||| ||||| Sbjct 110579851 AAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAAAAT 110579910 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || ||||| Sbjct 110579911 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTT 110579970 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 110579971 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCG 110580030 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 110580031 ACCCTGCACCTGGT 110580044 >seq3 Length=247869975 Score = 86.0 bits (94), Expect = 1e-11 Identities = 120/168 (71%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| || |||| || || ||||| |||| || ||| Sbjct 230111531 AAAATG---CAGATTTTTATAAAAACTCTTACAGAGAAGACCATCACCCTGGAGGTTGAA 230111587 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 | ||| || ||| | ||| |||||| ||||| || || || ||||||| | | || Sbjct 230111588 ACTTCAGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAAATCTTCCT 230111647 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGG 206331 | |||||||||||||| || | ||||| ||||||||||| || Sbjct 230111648 GGTTAGCAAAGACTTATCTTTGCTGACAAGCAACTGGAAGATGGATGG 230111695 >seq13 Length=135337776 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || || || |||||| |||| Sbjct 126789514 AAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATCGAGAAC 126789455 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||| ||||| || ||||| || || ||| || || | ||||| Sbjct 126789454 GTCAAAGCAAA-GATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTT 126789396 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || ||| ||||||||||| | || || | || |||||| ||||||||||||| Sbjct 126789395 TGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTC 126789336 Query 206364 TACTCTTCAC 206373 ||||| ||| Sbjct 126789335 CACTCTGCAC 126789326 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || || || |||| Sbjct 126789754 CAGATCTTTGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGTGAC 126789695 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| ||||| || ||||| || || ||| || Sbjct 126789694 ACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAGCAG 126789635 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| |||||||| ||| |||||||||| | || || | || |||||| || Sbjct 126789634 AGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAACATC 126789575 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || | ||||| || Sbjct 126789574 CAGAAAGAGTCCACCTTGCACCTGGT 126789549 >seq6 Length=183735486 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| || ||||||||| | |||| ||||||| ||||| || || ||| Sbjct 139777817 AACATCCAAGATAAGGAAGGAATTCCTTCTGACGAGTAAAGACTGATCTTTGCTGGCAAG 139777758 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||| || ||| | ||||| | || |||||| | || || ||||| || |||| Sbjct 139777757 CAACTGGAGGACGGATGTGCTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTC-- 139777700 Query 206374 CTTGTTTTGAGACTTCG 206390 |||| ||||||||||| Sbjct 139777699 -TTGTGTTGAGACTTCG 139777684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181665230280354