Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq7 107 6e-20
seq12 104 7e-19
seq14 98.7 3e-17
seq13 98.7 3e-17
seq20 95.1 4e-16
>seq7
Length=173848474
Score = 107 bits (118), Expect = 6e-20
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 29250582 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29250641
Query 2829 CCGGGCTTCAGC 2840
||||| ||||||
Sbjct 29250642 CCGGGTTTCAGC 29250653
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 29288125 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 29288066
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 29288065 TCCCGGGTTTCGGC 29288052
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 29303614 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 29303555
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 29303554 CCGGGTTTCGGC 29303543
Score = 102 bits (112), Expect = 3e-18
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827
|||||| | |||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 29249869 GCTGAAATTGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTTAAAGTTCCCTGGTTCAAC 29249810
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||||||
Sbjct 29249809 CCCGGGTTTCAGC 29249797
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 29271426 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29271367
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 29271366 CCGGGTTTCGGC 29271355
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||| | |
Sbjct 29468927 GCCGAAATAGCTCAGTTGGGAGAGCGTTAAACTGAAGATCTAAAGGTCCCTGGTTCGATC 29468868
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 29468867 CCGGGTTTCGGC 29468856
Score = 86.0 bits (94), Expect = 2e-13
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| |||||||| |||||||||||||||||||||||||||||||| |||||| | || ||
Sbjct 80081992 AAATAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCTCTGGTTTGATCCTGG 80081933
Query 2833 GCTTCAG 2839
| |||||
Sbjct 80081932 GTTTCAG 80081926
>seq12
Length=134183262
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 58243122 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 58243063
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 58243062 CCGGGTTTCGGC 58243051
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 58234254 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 58234195
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 58234194 CCGGGTTTCGGC 58234183
>seq14
Length=114479721
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 94886241 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 94886182
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 94886181 CCGGGTTTCGGC 94886170
>seq13
Length=135337776
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 126804200 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 126804141
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 126804140 CCGGGTTTCGGC 126804129
>seq20
Length=64411610
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||| | |
Sbjct 1357225 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCGATC 1357166
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1357165 CCGGGTTTCGGC 1357154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15847818950730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |