Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq7 107 6e-20 seq12 104 7e-19 seq14 98.7 3e-17 seq13 98.7 3e-17 seq20 95.1 4e-16 >seq7 Length=173848474 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 29250582 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29250641 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 29250642 CCGGGTTTCAGC 29250653 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 29288125 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 29288066 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 29288065 TCCCGGGTTTCGGC 29288052 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 29303614 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 29303555 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29303554 CCGGGTTTCGGC 29303543 Score = 102 bits (112), Expect = 3e-18 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827 |||||| | |||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 29249869 GCTGAAATTGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTTAAAGTTCCCTGGTTCAAC 29249810 Query 2828 CCCGGGCTTCAGC 2840 |||||| |||||| Sbjct 29249809 CCCGGGTTTCAGC 29249797 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 29271426 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29271367 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29271366 CCGGGTTTCGGC 29271355 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||| |||||||||||||||||||||||||| | | Sbjct 29468927 GCCGAAATAGCTCAGTTGGGAGAGCGTTAAACTGAAGATCTAAAGGTCCCTGGTTCGATC 29468868 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29468867 CCGGGTTTCGGC 29468856 Score = 86.0 bits (94), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||| |||||||||||||||||||||||||||||||| |||||| | || || Sbjct 80081992 AAATAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCTCTGGTTTGATCCTGG 80081933 Query 2833 GCTTCAG 2839 | ||||| Sbjct 80081932 GTTTCAG 80081926 >seq12 Length=134183262 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 58243122 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 58243063 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 58243062 CCGGGTTTCGGC 58243051 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 58234254 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 58234195 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 58234194 CCGGGTTTCGGC 58234183 >seq14 Length=114479721 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 94886241 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 94886182 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 94886181 CCGGGTTTCGGC 94886170 >seq13 Length=135337776 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 126804200 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 126804141 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 126804140 CCGGGTTTCGGC 126804129 >seq20 Length=64411610 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||| |||||||||||||| | | Sbjct 1357225 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCGATC 1357166 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1357165 CCGGGTTTCGGC 1357154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847818950730